Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1096 141 1e-28 seq117 131 2e-25 seq596 87.8 2e-12 seq859 82.4 1e-10 >seq1096 Length=651278 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| ||||| || || | Sbjct 434580 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCGCGTTTCT 434521 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||||||||||| Sbjct 434520 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 434461 Query 33446 CAATAAGTCTCTCTCC 33461 | | || | |||||| Sbjct 434460 CCACAACCCGCTCTCC 434445 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 432399 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 432340 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | ||| || || Sbjct 432339 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCTTGGCTAAACCGCTC 432280 Query 33684 CGCC 33687 | || Sbjct 432279 CACC 432276 >seq117 Length=2247267 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 1676621 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATA 1676680 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1676681 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 1676740 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 1676741 CTGTTTCTTATACCATA 1676757 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || ||||||| | Sbjct 1686218 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 1686277 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 1686278 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 1686337 Query 63332 CGGTTCCA 63339 || |||| Sbjct 1686338 AGGCTCCA 1686345 >seq596 Length=5634117 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| Sbjct 2844345 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 2844286 Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886 || |||||||| || || ||||||| Sbjct 2844285 GTACTGGATTGGAAAGATGACAAATC 2844260 >seq859 Length=171326 Score = 82.4 bits (90), Expect = 1e-10 Identities = 139/201 (69%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 31096 TGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCT 31155 || ||||| || | |||||||| | | || |||| | | || ||||| || |||| ||| Sbjct 16853 TGAACTTCCTCTATTTCTGGATCAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCA 16912 Query 31156 CCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCC 31215 || | ||||| | ||| | ||| ||| ||||| || | || || | |||| Sbjct 16913 CCCTTTTTTACTTCTAACTTTTCTTTGCCAGAATTAAATAGTACAACACCCACATTTCGT 16972 Query 31216 CTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCA 31272 ||||||||||| ||||| || || ||||||| ||| || | ||| | ||| ||| Sbjct 16973 CTATAATCTTCATCTATGACTCCCCCTCCTACATCTATGAAGTGTTTCGCAGCCAGGCCA 17032 Query 31273 GACCTAGGAGCTATTCTACCA 31293 || | ||||||| ||| ||| Sbjct 17033 GAACGGGGAGCTACTCTTCCA 17053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622835201880280