Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq117 134 2e-26 seq1096 129 7e-25 seq596 91.5 2e-13 seq859 82.4 1e-10 >seq117 Length=2247267 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | | Sbjct 1676621 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATA 1676680 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1676681 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 1676740 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 1676741 CTGTTTCTTATACCATA 1676757 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || || ||||||| | Sbjct 1686218 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 1686277 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 1686278 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 1686337 Query 63187 CGGTTCCA 63194 || |||| Sbjct 1686338 AGGCTCCA 1686345 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 1704047 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACTGCAATCCTTGCTGCCAGGA 1704106 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1704107 TGGCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 1704166 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| |||||| || ||||| || ||||| Sbjct 1704167 GTTCCACAGTGGTGACCCCACTATATAAGCCCTGGATTACTTTCAT 1704212 >seq1096 Length=651278 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| ||||| || || | Sbjct 434580 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCGCGTTTCT 434521 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| ||||| || || ||||||||||| |||||||| ||||| ||||||| Sbjct 434520 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 434461 Query 32803 CAATAAGTCTCTCTCC 32818 | | || | |||||| Sbjct 434460 CCACAACCCGCTCTCC 434445 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || || ||||| | ||||||||||| || ||||| |||||||| ||||| Sbjct 432399 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 432340 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | || || |||||||| |||||| Sbjct 432339 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 432294 >seq596 Length=5634117 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 2844344 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 2844285 Query 33219 TATTGAATTGGAAAAATAACAAATC 33243 || || |||||||| || ||||||| Sbjct 2844284 TACTGGATTGGAAAGATGACAAATC 2844260 >seq859 Length=171326 Score = 82.4 bits (90), Expect = 1e-10 Identities = 139/201 (69%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 30453 TGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCC 30512 || ||||| | | |||||||| | | || |||| | | || ||||| || |||| ||| Sbjct 16853 TGAACTTCCTCTATTTCTGGATCAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCA 16912 Query 30513 CCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCC 30572 ||| | ||||| | || | ||| ||| ||||| || | || || | ||||| Sbjct 16913 CCCTTTTTTACTTCTAACTTTTCTTTGCCAGAATTAAATAGTACAACACCCACATTTCGT 16972 Query 30573 CTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCA 30629 ||||||||||| ||||| || || ||||||| ||| || | ||| | ||| ||| Sbjct 16973 CTATAATCTTCATCTATGACTCCCCCTCCTACATCTATGAAGTGTTTCGCAGCCAGGCCA 17032 Query 30630 GACCTAGGAGCTATTCTACCA 30650 || | ||||||| ||| ||| Sbjct 17033 GAACGGGGAGCTACTCTTCCA 17053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633518080886800