Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq692 91.5 1e-13 seq649 91.5 1e-13 >seq692 Length=1323805 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| |||||||| | | ||| | || || || |||||||||||||| || Sbjct 819827 ACCACCACAAAGTCTCAA--CGAGATGAA--GTGGACTCCTTTTGAATGTTGTAGTCAGG 819882 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| | || ||| | || ||||| Sbjct 819883 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACTCTGCTCATCAGGAGG 819942 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| |||| || || |||||| ||| | ||| | || || | || ||| || Sbjct 819943 AATTTCTTCCTTATCCTGAATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCAAC 820002 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | | || || || || || ||||| |||||||| ||||| Sbjct 820003 CTCAACACTGATGGTCTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 820050 >seq649 Length=3559941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || ||||| || ||||||||||| | ||| || |||||| Sbjct 3264189 AACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 3264130 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || || ||||||| | ||| ||||| || || ||||| || || || Sbjct 3264129 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTG 3264070 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | ||| | |||||| ||| || || |||| ||| | || || Sbjct 3264069 GATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 3264010 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||||| || || || || |||||||| Sbjct 3264009 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 3263980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420060753459396