Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq649 123 6e-23 seq460 86.0 1e-11 >seq649 Length=3559941 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || ||||| | ||| ||||| ||||| || || || | Sbjct 3264206 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 3264147 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || ||||| ||||| || | ||| || |||||| Sbjct 3264146 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGG---TCTGGG 3264090 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||||||||| || || ||||| ||||| || | || || | || Sbjct 3264089 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 3264030 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 3264029 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3263980 Score = 105 bits (116), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || ||||| ||| Sbjct 3263942 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 3263883 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || || || ||||||||||| || || ||||| Sbjct 3263882 ATGAGCCTCTGCTGG---TCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACA 3263826 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || || || || ||||| ||||| || || || ||||| Sbjct 3263825 TTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTC 3263766 Query 288460 ACGAATATCTGCATTATG 288477 ||||| || |||||| || Sbjct 3263765 ACGAAGATTTGCATTTTG 3263748 >seq460 Length=4635380 Score = 86.0 bits (94), Expect = 1e-11 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||| | ||| ||| | ||| || | ||||| || || | Sbjct 1644209 TCTTTCTGGATATTGTAGTCTGAGAGAGTGTGGTTGTCCTCCAGCTGTTTGCCCGCACA- 1644267 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||| | || | ||||| || || || || |||||||| ||||| || || Sbjct 1644268 ATCAGACGCCGCTGGTCAAGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACCTTC 1644327 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | | || || || || ||||| ||||| || || | |||| || Sbjct 1644328 TCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATCCG--TCTTCACA 1644385 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 1644386 AATATCTGCAT 1644396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179437010706674