Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq649 123 2e-23 seq692 96.9 3e-15 >seq649 Length=3559941 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || ||||| || ||||||||||| | | ||||| | || Sbjct 3264192 AAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 3264133 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||||| ||||||||| || || || || || || || Sbjct 3264132 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATC 3264073 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || |||| || ||||| || | || | ||| Sbjct 3264072 CTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 3264013 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 3264012 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3263980 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 3263948 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 3263889 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || || || || || || || ||| Sbjct 3263888 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 3263829 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | ||||||||| || | || Sbjct 3263828 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTTAGGGTC 3263769 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| ||||||||||| Sbjct 3263768 TTCACGAAGATTTGCATTTT 3263749 >seq692 Length=1323805 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || || || |||||||||||||| || | | || || | ||||| Sbjct 819844 ACGAGATGAA--GTGGACTCCTTTTGAATGTTGTAGTCAGGCAAAGTACGTCCATCTTCC 819901 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || |||||||| ||| | || | | ||||| || ||||||||| |||| || || || Sbjct 819902 AGTTGCTTGCCAGCAAAGATCAAACTCTGCTCATCAGGAGGAATTTCTTCCTTATCCTG- 819960 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | | || ||||| | | || | |||||| || || || || ||| | | |||||| Sbjct 819961 AATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCAACCTCAACACTGATGGTCTT 820020 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 || || | ||||| || ||||||||||| || || Sbjct 820021 TCCTGTAAGGGTTTTCACAAAAATTTGCATCTTGAT 820056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499554970110520