Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq143 156 6e-33 >seq143 Length=1398753 Score = 156 bits (172), Expect = 6e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || |||||| |||| ||| ||||||| || || || ||||| || ||||| || || Sbjct 1310992 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 1311051 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || |||||||||||||| | ||| ||||| | |||||| Sbjct 1311052 CTGTTGTGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 1311111 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||||| ||||| ||||| | || || || | || | || | ||| | Sbjct 1311112 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGTGGGTAGATCATCTCG 1311171 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| ||||||| || || || || Sbjct 1311172 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCCCCATCGAT 1311215 Score = 147 bits (162), Expect = 3e-30 Identities = 213/301 (71%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| || | || ||||| |||||||| || || ||||| |||||||| | Sbjct 1309242 AACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATCGA 1309301 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || ||||| || |||||||| | Sbjct 1309302 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTC 1309361 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || || || || |||| || ||||||||||| || || || |||| || | Sbjct 1309362 AGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATTTCTAC 1309421 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| ||||||| ||||||||| | || || || ||||| || | | | ||| || || Sbjct 1309422 CATGGTCTCACCAAAGATGGCATCAGGGCGAGGCTTTTCTACCAGAAGGGCAGGATACAG 1309481 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | || ||||| || ||||| ||| | ||||| || |||||||| || Sbjct 1309482 CTCCATGGCATCAATATCACCATAAAGTGCTTCTAACCCCGCAGCCATTTCCTTCTCTCC 1309541 Query 9175 T 9175 | Sbjct 1309542 T 1309542 Score = 125 bits (138), Expect = 1e-23 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | || Sbjct 1312289 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 1312348 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || |||||||| | ||||| || ||||||| || ||||| ||||| || Sbjct 1312349 AAATTGATGGGTGAAGTGTTGGGCAAAAAATGCAAACATCATATTTGTGCCTTGGGGGTC 1312408 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || || ||| |||||||||| | ||||||| || || Sbjct 1312409 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 1312465 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| || || || || |||| ||| ||| Sbjct 1312943 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 1313002 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||||| ||||||||||| || |||||||| || | ||||| Sbjct 1313003 TAATAGGAGAGATTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACATTGTAAGTT 1313062 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || || || |||| | ||||||||| Sbjct 1313063 GGTGGGCTCTCGATCAAATGTGACCTGGCT 1313092 Score = 96.9 bits (106), Expect = 5e-15 Identities = 194/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || |||| ||||| || || |||| | || || | | | || Sbjct 1310405 CCAGCAATTTGCCTGCTGAATGATTCCACGAACTGGGTAAGCCCATGTTCCAGTAATATA 1310464 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| || || || | | || |||| | ||| |||| | || ||| Sbjct 1310465 GAGTTGTTGTAGACAAACTGCTGGAAATTGTACTCCTGGTCATCTATTTGCAAGGTGTCA 1310524 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| || || ||||| || || || ||||| ||||| Sbjct 1310525 GGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGGTTTTGGTAT 1310584 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | || | |||||| || || | Sbjct 1310585 TGGAATTGTTGGTT--GAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 1310642 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | || || ||||| | | || | ||| ||||||||||| || Sbjct 1310643 TCAAGTGTTGTACATAGTCTTCAATCACAATCTTAATGGTTTCTCC 1310688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723597882752200