Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq649 136 4e-27 seq525 134 1e-26 seq460 107 2e-18 seq226 102 8e-17 seq321 89.7 5e-13 seq1096 87.8 2e-12 seq766 86.0 6e-12 >seq649 Length=3559941 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 3263749 AAAATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 3263808 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | ||| | || | || |||| || || ||||| || ||| | ||| Sbjct 3263809 AGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGAC 3263868 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| |||||||| || | ||||| || || ||| Sbjct 3263869 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 3263928 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || || |||| ||||| |||| |||||| |||| || || Sbjct 3263929 AACATCCAGAAAGAGTCGACCCTGCACCTGGTTCTGCGTCTGAGGGGTGG 3263978 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 3263980 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3264039 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| || || ||||| || ||| | ||||| Sbjct 3264040 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 3264099 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || || |||||| Sbjct 3264100 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3264159 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || || ||| |||| || ||| |||| || ||| Sbjct 3264160 ATCCAGAAAGAGTCCACTCTCCATCTGGTTCTTCGTCTGAGGGGTGGC 3264207 >seq525 Length=1461377 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 453996 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 454055 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||||||||| || ||| | ||||| Sbjct 454056 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 454115 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||||||||| || | ||||||||| ||||||||| Sbjct 454116 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 454175 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | ||||| || |||| ||||| ||||| || || Sbjct 454176 ATCCAGAAGGAGTCCACGCTCCACCTGGTCCTGCGCTTGAGGGGAGG 454222 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 453312 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 453371 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||||||||| || ||| | ||||| Sbjct 453372 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 453431 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||||||||| || | ||||||||| ||||||||| Sbjct 453432 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 453491 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | |||||||| |||| || || | ||||| ||| Sbjct 453492 ATCCAGAAGGAGTCCACGCTGCACCTGGTCCTCCGCCTCAGAGGGGGC 453539 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 453540 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 453599 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||||||||| || ||| | ||||| Sbjct 453600 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 453659 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||||||||| || | ||||||||| ||||||||| Sbjct 453660 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 453719 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | |||||||| |||| || || | ||||| ||| Sbjct 453720 ATCCAGAAGGAGTCCACGCTGCACCTGGTCCTCCGCCTCAGAGGGGGC 453767 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 453768 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 453827 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||||||||| || ||| | ||||| Sbjct 453828 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 453887 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||||||||| || | ||||||||| ||||||||| Sbjct 453888 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 453947 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | |||||||| |||| || || | ||||| ||| Sbjct 453948 ATCCAGAAGGAGTCCACGCTGCACCTGGTCCTCCGCCTCAGAGGGGGC 453995 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||||| ||||||||| | || || ||| ||| Sbjct 453084 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 453143 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||||||||| || ||| | ||||| Sbjct 453144 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 453203 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || ||||||||||| || | ||||||||| ||||||||| Sbjct 453204 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 453263 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | |||||||| |||| || || | ||||| ||| Sbjct 453264 ATCCAGAAGGAGTCCACGCTGCACCTGGTCCTCCGCCTCAGAGGGGGC 453311 >seq460 Length=4635380 Score = 107 bits (118), Expect = 2e-18 Identities = 142/192 (74%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || ||| | |||||| ||||||||| | ||||| ||| ||| Sbjct 1644396 ATGCAGATATTTGTGAAGACGG--ATGGGCAAGACCATCACCCTTGACGTTGAGACCAAT 1644339 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 || | | || | | | | |||| ||||||| ||||| ||||| || ||||| ||||| Sbjct 1644338 GATACCATGGAGAAGGTCAAAGCCAAAATCCAAGACAAGGAGGGCAT-CCCGCTTGACCA 1644280 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 | ||| || ||| ||||||||||||||||| ||| | | ||| ||| |||||||| Sbjct 1644279 GCGGCGTCTGATTGT-GCGGGCAAACAGCTGGAGGACAACCACACTCTCTCAGACTACAA 1644221 Query 38423 CATCCAAAAGGA 38434 ||||| || || Sbjct 1644220 TATCCAGAAAGA 1644209 >seq226 Length=3090976 Score = 102 bits (112), Expect = 8e-17 Identities = 164/228 (72%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 ||||| || || || || || | |||||| ||||||||| || | |||||| ||| ||| Sbjct 1604444 CAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCAAGGTCGAGCCCAGTGAC 1604385 Query 38307 AGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAAC 38364 | | || || | |||| ||||||| ||||| ||||| || || ||| ||||| | Sbjct 1604384 ACCACTGAGAATGGC-AAAGCCAAAATCCAAGACAAGGAGGGCAT-CCTGCCTGACCAGC 1604327 Query 38365 AGCGGCTCATTTACGCGGG-CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || |||| || || |||||||||||| |||| ||| | ||| ||| |||| Sbjct 1604326 AGCATCTGATTTTTGCAGGACAAACAGCTGGAGGACGGCCGCCCTCTCCCAGACCACAAT 1604267 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| | || | || ||||| | |||||| || || |||| ||| Sbjct 1604266 ATCCAGA--GAGTCCACCCTGCACTGGGTGCTACGCCTGCGAGGTGGC 1604221 >seq321 Length=5251196 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || || || || || || | ||||||| ||| |||| || ||| || ||| ||| Sbjct 2386081 CAGATCTTTGTGAAGACCCTGATGGGCAAAGCCACCACCCCTGAGGTCAAGCCCAGTGAC 2386140 Query 38307 AGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | || || | | |||| ||||||| ||||||||||| | || | | ||| || Sbjct 2386141 ACCACTGACAATG-TCAAAGTCAAAATCCAAGACAAAGAGGGCACCCCACCTGTCCAGCA 2386199 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 || || |||| |||||||||||||||||| | | | ||| || |||||||| || Sbjct 2386200 GCATCTGATTTTCGCGGGCAAACAGCTGGAGGCTGGCCACACTCTGTCAGACTACAATAT 2386259 Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || || | || ||||| ||||||| || Sbjct 2386260 CCAGAAAGAGTCCACCCTGCA-CTGGTGCTTCG 2386291 >seq1096 Length=651278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| || || | ||| ||||| ||||||||||| | Sbjct 434580 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCGCGTTTCT 434521 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| ||||| | |||||| || |||||||||| || || || || || || | Sbjct 434520 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 434461 Query 133037 CCACCAGGCGCTCGCC 133052 |||| | ||||| || Sbjct 434460 CCACAACCCGCTCTCC 434445 >seq766 Length=1332048 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/222 (70%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG-T 38311 || || || || || |||||||| |||| |||| || |||||| ||| |||| | | Sbjct 802746 TTTGTGAAGACCCTGACGGGCAAGACCACCACCCGTGAGGTCGAGCCCAGTGACACCACT 802805 Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAA-GAGGGAATTCCCGCC-GACCAACAGCGG 38369 | || | | | || ||||||| ||||| ||||| || | ||| |||||||||| Sbjct 802806 GAGAATG-TCAGAGCCAAAATCCAAAACAAAAGAGGGCAT-CTCGCGTGACCAACAGCAT 802863 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || | || | ||||||||||| ||||| | |||| ||| | ||||| ||||| Sbjct 802864 CTTACTTTTGTGGGCAAACAGCCAGACGATGGCTGCACTCTCTCAGGTTACAATATCCAG 802923 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||| ||||| |||||||| || || |||| ||| Sbjct 802924 AAAGAGTCGAGCCTGCACTTGGTGCTTTGTCTGCGAGGTGGC 802965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500082875182720