Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq808 178 5e-39 seq692 120 1e-21 seq15 105 3e-17 seq203 96.9 1e-14 seq20 87.8 7e-12 >seq808 Length=258708 Score = 178 bits (196), Expect = 5e-39 Identities = 461/697 (66%), Gaps = 13/697 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || ||||| || || || || ||||||| |||||||| || || | ||| | || || Sbjct 11890 GCCATTGGCATCGACCTGGGCACCACCTACTCATGTGTGGGGGTGTTCCAGCACGGTAAG 11949 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TT 451029 ||||| || || || |||||||| || || || || || || | || || || Sbjct 11950 GTAGAGATCATTGCCAATGACCAGGGCAACCGCACCACCCC--CA--GCTATGTGGCCTT 12005 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCA 451088 || || | ||| | || | ||| | || || || | | | |||| ||| || Sbjct 12006 CACCGACACGGAACGGCTCATTGGGGATGCGGCCAAGAACCA-GGTAGCCATGAATCCCC 12064 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 | ||||| || | ||| || |||||| | |||||| | | | | ||||| | || | Sbjct 12065 AGAACACTGTCTTTGACGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTGC 12124 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 | ||| | ||| || ||| | | ||| | ||| || ||| |||||| | | Sbjct 12125 AGGCAGATATGAAACACTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAA 12184 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 ||| || ||||| || | ||| |||| |||||| ||||| || |||||||| | Sbjct 12185 CAGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTTCTATGGTAC 12244 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | || || ||||| || || || || | | | || || || || |||| || | Sbjct 12245 TGACAAAGATGAAGGAGACTGCTGAGGCCTTTTTGGGCCACCCTGTCACCAATGCTGTGA 12304 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 | ||||| || ||||||||||||||| | || || ||||| || || |||||||| | Sbjct 12305 TAACTGTGCCAGCTTATTTCAATGATTCTCAGCGTCAAGCCACCAAGGATGCAGGTGTGA 12364 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 |||| ||| | ||||| || ||||||| |||||||| ||||| ||||| | ||||||| Sbjct 12365 TTGCGGGTCTGAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCATTGCATATG 12424 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | ||| ||| | || | ||| | || | || | ||||| | ||||||| Sbjct 12425 GCTTAGATAAAGC---AGGTCAGGGAGAGCGACATGTCTTGATCTTTGACCTGGGTGGAG 12481 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 |||| |||| || | || | || || ||||| | |||||||||||||| || Sbjct 12482 GAACATTTGATGTGTCCATCCTGACCATAGATGATGGAATCTTTGAAGTAAAGGCCACAG 12541 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || || || || || || |||| || Sbjct 12542 CTGGGGACACCCACCTTGGTGGAGAGGACTTTGACAA 12578 >seq692 Length=1323805 Score = 120 bits (132), Expect = 1e-21 Identities = 149/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || || || || | | |||| |||||| | || Sbjct 820050 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAGACCATCAGTGTTGAGGTTGAACCCTCG 819991 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| ||| ||| || ||||| |||||||||| ||||||||||||| | Sbjct 819990 GATACAATAGAAAGTATGAAAGCCAAGATTCAGGATAAGGAAGAAATTCCTCCTGATGAG 819931 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || |||| || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 819930 CAGAGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGCCTGACTACAAC 819871 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | ||||||| Sbjct 819870 ATTCAAAAGGAGTC--CACTTCA 819850 >seq15 Length=4502700 Score = 105 bits (116), Expect = 3e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 2597154 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 2597095 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || |||||| | |||| || ||||| || Sbjct 2597094 AAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGAATCATCAATGAGCC 2597042 >seq203 Length=2358883 Score = 96.9 bits (106), Expect = 1e-14 Identities = 418/653 (64%), Gaps = 25/653 (4%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| ||| ||||||||||| ||||||| || ||||| ||||| | ||| | || || Sbjct 1894679 GCAGTTGACATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCACGGGAAA 1894738 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || ||||| || || || || || ||| ||||| || || | || | ||||| Sbjct 1894739 GTGGAAATAATTGCCAACGATCAGGGAAACCGAACCACCCCAAGTTATGTCACCTTTACT 1894798 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 || | ||| || || | ||||| || ||||| ||| ||| |||| Sbjct 1894799 GACACTGAA---CTATTG----ATGCTGCAAAGAATCAAGTTGCAATG--AATCCCAA-- 1894847 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||||| | |||||| |||| | | ||||| ||| | ||| ||| | | ||| Sbjct 1894848 -CACAGTTTTTGATGCCAAACATCTGATTGGAGGTAGATTTGACAATGCTGTCATCCAAT 1894906 Query 451152 AAGAGAAAAA--ATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207 || | || ||| | ||| ||| || || || | || | |||| | | Sbjct 1894907 CTGATATGAAGCATTGGCCCTTC--ATGGTG--GTGAACGATGCTGGCAGGCCCAAGGTC 1894962 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 |||||| | || | | || || |||| ||| ||| || || | || ||||||||| Sbjct 1894963 CAAGTAGAATACGAGGAAGAGACCAAAAGTTTCTATCCAGAGGAGGTGTCCTCTATGGTT 1895022 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | || || ||||| |||| |||| || |||| | ||||| |||| ||| Sbjct 1895023 TTGACAAAGATGAAGGAAATCACAGAGGCTTACCTTGGGAAGACTGTTACCAATGCTGTA 1895082 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 | || || || || ||||| || | | || | | || || || |||| ||| || Sbjct 1895083 GTCACAGTACCTGCCTATTTTAACAACTCTCAGCATTAGGCTACCGAACATGCTGGAAAT 1895142 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||||||| | ||||| || ||||| || | ||| || || || |||||| | || ||| Sbjct 1895143 ATTGCTGGTCTTAATGTACTACGAATCATCAGTGAGCCAACTGCTGCTGCTATTGCTTAT 1895202 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || ||| || ||| | || |||| ||| | | | ||||| || || || Sbjct 1895203 GGCTTAGACAA---AAAGGTTGGAGCTGAAAGGAATGTGCTGATCTTTGACTTGGGAGGT 1895259 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAA 451560 || ||| |||| || | || | |||||||||||| | ||||| || || Sbjct 1895260 GGCACTTTTGATGTGTCAATCCTCACTATTGAAGATGGGATCTTTGAGGTCAA 1895312 >seq20 Length=5879716 Score = 87.8 bits (96), Expect = 7e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||||||||| || || || |||| |||| || ||||| | || ||||||||| Sbjct 4227503 GCCACTAAAGATGCTGGCCAGATATCTGGACTAAACGTGCTTCGGGTAATAAATGAACCT 4227562 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| |||| |||||| |||| Sbjct 4227563 ACAGCTGCTGCTCTGGCTTATGGTCTAGACAAATCAGAAGA 4227603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975354310291364