Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq649 132 1e-25 seq969 105 1e-17 seq692 96.9 8e-15 seq194 93.3 9e-14 seq321 89.7 1e-12 >seq649 Length=3559941 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || |||||||||||||| || || |||||||| | |||||| | |||||||| Sbjct 3264189 AACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 3264130 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| ||||| ||||| || | || |||||||| || ||||| || || || || Sbjct 3264129 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTG 3264070 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || ||| || || || |||||||| ||| ||||| || ||||| | || Sbjct 3264069 GATCTTGGCCTTCACATTTTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGT 3264013 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||| || || ||||| | ||||| Sbjct 3264012 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3263980 >seq969 Length=292708 Score = 105 bits (116), Expect = 1e-17 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| | ||| ||||||||||||| |||||||| ||||| || | ||| | || Sbjct 250767 TCTCAACATAAGATGAAGAGTGGACTACTTTTGAATGTTGTAGTC----AAAGTACATCC 250822 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| || ||||| || | |||||| |||| || || || |||||| |||||||| Sbjct 250823 ATCTTCCAGTTGCTTGCCAGTGAAGATCAGTCTCTGATGATCAAGAGGAAGTCCTTCTTT 250882 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||||| || || ||| || || || || || || || ||| | ||||| || | Sbjct 250883 ATCTTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAATCTCAAGAGTGAT 250942 Query 195105 CGTCTTTCCTGTCAAAGTTTT 195125 |||| || | |||||||| Sbjct 250943 AATCTTCCCCATAAAAGTTTT 250963 >seq692 Length=1323805 Score = 96.9 bits (106), Expect = 8e-15 Identities = 159/222 (72%), Gaps = 12/222 (5%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCT 194981 |||||||| | || ||||| ||||||| |||||||| ||||| || ||||| ||| | Sbjct 819837 AGTCTCAA--CGAGATGAAG--TGGACTCCTTTTGAATGTTGTAGTCAGGCAA-AGTACG 819891 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || ||||| | | || | || |||||||| |||| Sbjct 819892 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACTCTGCTCATCAGGAGGAATTTCTTC 819951 Query 195042 TTTGTCTTGAATTTTTTGCTTG---ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || ||||| || |||| || |||| || || ||||| ||| || |||| Sbjct 819952 CTTATCCTGAATCTTG-GCTTTCATACTTTCT--ATTGTATCCGAGGGTTCAACCTCAAC 820008 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | | ||||||||||| | ||||| || || | |||||| Sbjct 820009 ACTGATGGTCTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 820050 >seq194 Length=5677166 Score = 93.3 bits (102), Expect = 9e-14 Identities = 148/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| ||| ||||| || ||||||||||| |||||||| ||||| || | ||| | Sbjct 189052 GAGTCCCAACACAAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACA 189107 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || ||||| ||| || || || ||||| | ||| Sbjct 189108 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCTGATC---AGGAA-GAGTTC 189163 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 | || ||||| || ||| || || || || || | ||| ||| || ||||| || Sbjct 189164 CTGATCCTGAATCTTGGCCTTCACATTTTCTATTGTATTTGAAGGTTCAACCTCAAGAGT 189223 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| || | | |||||| ||||| Sbjct 189224 GATGGTCTTCCCCATAAGAGTTTTCACGAA 189253 >seq321 Length=5251196 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || |||||||| || | ||||| ||| | || ||||| Sbjct 2386281 GTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCAGCCTCCAGCTG 2386222 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || || | || ||| | || || |||| ||||||||||| ||||| Sbjct 2386221 TTTGCCCGCGAAAATCAGATGCTGCTGGACAGGTGGGGTGCCCTCTTTGTCTTGGATTTT 2386162 Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080 ||||| || ||| ||||||| Sbjct 2386161 GACTTTGACATTGTCAGTGGTGTC 2386138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109277142303761