Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq533 93.3 5e-14 >seq533 Length=971543 Score = 93.3 bits (102), Expect = 5e-14 Identities = 172/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | | ||| ||| |||| | | || ||||| ||| ||| ||||| Sbjct 309202 ACTGAGGAACTTAGAAGTGGTCAACCACACTTGGCGATCCAAGAATGGGACCTGTGAGAT 309143 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| |||||||| ||||| ||| || | |||||||| | | | ||||||| | Sbjct 309142 CCACCTGACCTGCTCTGTGGAGAATATGAGTGACAACAACCTAGTAAGGTGGGAGGTC-- 309085 Query 2327 GGGCAAGACGCTTCT----ACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACA 2382 ||| || || | | | | || |||||||||| ||||||||||||| |||| Sbjct 309084 --GCAGGAAGCATATCTATAAGAGAAGCCAACCTCACTCTGTCCTGGGACCCCAAGAACT 309027 Query 2383 GCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGG 2442 ||| || |||| ||||| |||| || || || |||| ||| | || || ||| | | Sbjct 309026 CCAGCGAAGAGAAGTACACCTGCACAGCTGAGAATCCTGTCAGCCAACTGTCCTTCTCTG 308967 Query 2443 TCTCGGCCCAGA 2454 | || |||||| Sbjct 308966 TTTCCACCCAGA 308955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629170062746680