Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq386 361 6e-95 seq289 205 1e-47 seq597 107 2e-18 >seq386 Length=6704978 Score = 361 bits (400), Expect = 6e-95 Identities = 681/991 (69%), Gaps = 13/991 (1%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 || |||||||| || |||| ||| |||| ||| || | ||||| ||| ||| || || Sbjct 15323 TGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCAAACTTG 15264 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| | ||| |||| ||||||| || ||| || | ||||| || Sbjct 15263 TTGGCAAACAAGTGGTG--CTTTC-GTAGCATCCAGTTCAAGTCACCTGCTCCGAAGACA 15207 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || ||||| | ||| || ||| |||| |||||||| | || || || | || ||| Sbjct 15206 CACACAGAACGCACGTGGACCCCGCTGCAGGGCGGGTAGGGGGCCCCCTTGGAGACATCA 15147 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| || ||||| || |||||||||||||| || |||| || Sbjct 15146 CCTTCAAAGTACTGCCACTTGACGAACCTCGCAATCGCCTGCATGTCAGACATGTCATAC 15087 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | |||| | | || || || |||| || | ||| | |||||||| || Sbjct 15086 TTCTGGCTTAGGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGGATAGTGGCCCAGAGA 15027 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT-TAACCTGTC 160405 | || || || ||||| ||||| || | ||| ||||| |||| ||| | | || Sbjct 15026 TACTCATCTGGACTGTAAGTGTCTTTGGCCCACTCCATAAACTTCTGGATCTTTTCATTC 14967 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | || || | || || || | || ||||| || || ||||| ||||| | Sbjct 14966 TCT-AGCACATAGCCCACATACTTCCTACTGACCACAAAATAGGCACTGCCTGAGAACAG 14908 Query 160466 CGGTATGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCA 160524 || | | ||| || ||| ||| |||| || ||||| | || | ||| || | Sbjct 14907 GGGCGTTTCAAGAGGAGG-GTGCATTTTGTCCGTCCCCGTGTTGGTCAGCTTTCCATTAA 14849 Query 160525 CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584 | | | | |||| |||||||| | | || | | |||||| | || | ||||| Sbjct 14848 CAACTGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCGGACTCTA 14789 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 | |||| |||| | |||||| |||| | ||| ||||| ||||| || || | | Sbjct 14788 GGTTGTTTTCACCCATTAACGATTTGAGCTTCCGGACAATCTCCAGGTTGGTTTTAATAG 14729 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 | || || | ||||| | ||||||| |||| |||| | || |||| || |||| Sbjct 14728 GGAAATCCATGCCGCAAAGATTTATCAAGTACCTCCAGTCTGCACTCATCCTGTAGAGGT 14669 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 | |||||| || | || ||||| || || ||||| || || ||||| ||| |||| | Sbjct 14668 CTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATACACCACGCTCTCCA 14609 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC---CAGAA 160821 | | ||||||||| ||||||||| ||| || || |||| |||| |||||| || || Sbjct 14608 GCTGACTGGCCACGAAGACGTTACTGAAGCAGGAGGCGATGCCCATCACCGCGGCCAAAA 14549 Query 160822 AGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881 || | ||| | | | |||| ||||||||| | ||| || || ||||||||| |||| Sbjct 14548 AGGA-ATCCTCT--GATTTTCTGTCCACGTGAATGCAGTAGAGATTCTGAGGCATATAGA 14492 Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941 ||||||| || | ||| || | ||| || || || ||||| | ||| ||||| || || | Sbjct 14491 TGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTATAGAATACGCAA 14432 Query 160942 TCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAA 161001 | |||||||| | ||| || ||| |||| | | | || || ||| |||||| | Sbjct 14431 TGGGAAACTCCGCCTCTTCTTTACTAAGGGGCTCTACGATATATTTGCGCCTCTTGACGA 14372 Query 161002 AATAATCACAATCCCGCGTCATGTTGATATA 161032 || ||| ||||| | |||||||| ||||| Sbjct 14371 AAGAATTGCAATCTCTGGTCATGTTTATATA 14341 >seq289 Length=10330243 Score = 205 bits (226), Expect = 1e-47 Identities = 238/320 (74%), Gaps = 6/320 (2%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | |||||| || ||||| || || || || || |||||||||||| || Sbjct 9458892 AGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCGGAACCAAAAGTATTGAAGAGGCACTTG 9458833 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| ||||||| |||||||||||| ||||| | |||||||| ||| || Sbjct 9458832 TAACACCCTTCATCCTCCAGGGTGGTATTCCAGAATGTAATGGTTGAGTTCTTGAGTTCC 9458773 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || ||||| | ||| || |||||||| || ||||||| | Sbjct 9458772 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTTG 9458713 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||||||||| ||||||| || ||||| ||||| || |||||||| || || |||| Sbjct 9458712 CTGAAGGTGACCATGTTTTCTGGGCTTACAGCCTTGATTTTCTGCCATGTCACAATCAAG 9458653 Query 168393 ACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || || | ||| | ||||| || ||||| | ||||| || ||||||||||| ||| Sbjct 9458652 ACTTCCT---CGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCTCT 9458596 Query 168450 CGCTCATCTTGAGTTACGAC 168469 |||||||| || || || Sbjct 9458595 TCTTCATCTTGGGTCACCAC 9458576 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 167903 AGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTTGGATC 167962 ||| |||| ||||| |||| ||| || ||||| || || || || ||||| || || Sbjct 9461591 AGTCCCCAGGTGTAGCACCTGGCAGATTACCTCC---TTCCCCACCTGGCTCTTGGGGTC 9461535 Query 167963 TTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTTTTCGT 168022 ||| || || | | || || ||| || || |||||| | ||| | | | | || Sbjct 9461534 TTTGACCTGGAGGACACTCGTGACAGACGTGGTCCCATTGGGGTGTGAGAGAATCTCAGT 9461475 Query 168023 GCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGTGCTGT 168082 ||||| ||||||||||| || | ||||||||| | || ||||| || || || || | Sbjct 9461474 ACTGTTTTCAATCCCTGACCCAGAGACCTTCCAGGAGATCACAGGGGCTGGGCGGGCATT 9461415 Query 168083 AGCAGAGCAGGTAATATTTA 168102 |||||||| || ||||||| Sbjct 9461414 GGCAGAGCAAGTGATATTTA 9461395 >seq597 Length=2725100 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| | || |||| || |||| |||||| | ||||| || |||| | || | Sbjct 563186 AGATATTTTGCGAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 563245 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || |||||||||| || || || || | ||| | || || | | ||| Sbjct 563246 GGAATATAATTCTCATAATTTTCCCTAGACGGCCCCAGAACAACAGGGACAGAGCCGGCT 563305 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 563306 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAC 563365 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 563366 AGATAAAATTTGCA 563379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577115423203080