Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq525 125 6e-24 seq692 100 2e-16 seq88 84.2 2e-11 >seq525 Length=1461377 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| |||| || |||||||| || || || ||||| || || | Sbjct 454222 CCTCCCCTCAAGCGCAGGACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAC 454163 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 454162 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 454103 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | || |||||| | || | |||||| | || || Sbjct 454102 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 454043 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || ||||| || || || |||||||| Sbjct 454042 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 453996 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || |||||||| || || || ||||| || || | | |||||| | Sbjct 453298 CGGAGGACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 453239 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | ||||| || ||||| || || || || ||||||||| Sbjct 453238 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 453179 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | |||||| | || || || || || || Sbjct 453178 TCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 453119 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || ||||| |||||||| Sbjct 453118 GTCTTGCCCGTCAAGGTCTTCACAAAGATCTGCAT 453084 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || |||||||| || || || ||||| || || | | |||||| | Sbjct 453526 CGGAGGACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 453467 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | ||||| || ||||| || || || || ||||||||| Sbjct 453466 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 453407 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | |||||| | || || || || || || Sbjct 453406 TCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 453347 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 453346 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 453312 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || |||||||| || || || ||||| || || | | |||||| | Sbjct 453754 CGGAGGACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 453695 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | ||||| || ||||| || || || || ||||||||| Sbjct 453694 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 453635 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | |||||| | || || || || || || Sbjct 453634 TCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 453575 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 453574 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 453540 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || |||||||| || || || ||||| || || | | |||||| | Sbjct 453982 CGGAGGACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 453923 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | ||||| || ||||| || || || || ||||||||| Sbjct 453922 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 453863 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | |||||| | || || || || || || Sbjct 453862 TCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 453803 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 453802 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 453768 >seq692 Length=1323805 Score = 100 bits (110), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| |||| || ||||||||||| || || | | || || ||| || ||||| Sbjct 819849 ATGAAG--TGGACTCCTTTTGAATGTTGTAGTCAGGCAAAGTACGTCCATCTTCCAGTTG 819906 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | ||||| || |||| ||| || ||||| | || || || || ||| | Sbjct 819907 CTTGCCAGCAAAGATCAAACTCTGCTCATCAGGAGGAATTTCTTCCTTATCCTG-AATCT 819965 Query 29703 TTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 | | ||| | | |||||| || || || |||| || |||| | | || || || || | Sbjct 819966 TGGCTTTCATACTTTCTATTGTATCCGAGGGTTCAACCTCAACACTGATGGTCTTTCCTG 820025 Query 29762 TTAAGGTTTTAACAAATATCTGCATTTT 29789 | | |||||| ||||| || ||||| || Sbjct 820026 TAAGGGTTTTCACAAAAATTTGCATCTT 820053 >seq88 Length=12711478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATG--GTGCGAGAAT 29632 |||||||| | || ||||| ||||| || | || || || |||| |||| || Sbjct 2426611 AGCACCAAGTATAGGGTGGACTCTTTCTGGGTATTGTAGTCT--AATGAAGTGCAGCCAT 2426668 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || || |||||||||||| | |||| | ||||| || |||| || ||||| ||| Sbjct 2426669 CTTCCAGCTGTTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGCGAGATGCCCTCCTTGG 2426728 Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 |||| | ||| ||||||| | || ||||||| | || || ||||| | || | Sbjct 2426729 CTTGGACTTTGGCTTTGACATTCTCACTAGTGTCACTGGGCTCAACCTCAAGGGAGATGG 2426788 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 | ||||| | ||||| | ||||| |||||| Sbjct 2426789 TCTTGCCCATCAAGGTCTCCACAAAGATCTGC 2426820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385151673843003