Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq162 118 9e-22 >seq162 Length=3138477 Score = 118 bits (130), Expect = 9e-22 Identities = 500/774 (65%), Gaps = 82/774 (11%) Strand=Plus/Plus Query 1040 GTCTAGTTGTTCTGGTTTCTTGTAAATATGCCCACAGCTCTAGCTTCTGGTCTGAAAAAG 1099 |||||||||||| | |||| | | || |||| ||||||| ||||| ||||| Sbjct 2082036 GTCTAGTTGTTCCCATCTCTTCCTGGTGTATCCGCAGCCCTAGCTTGGGGTCT-AAAAAT 2082094 Query 1100 AGTAGGTTTCTCTTGAGAGTTAA-GGAAGGCATTTTAAAGAAAAGGCTTAGaaaaaaaaT 1158 |||||| ||| | | | || ||||||||||||||||||| ||| | || || |||| Sbjct 2082095 AGTAGGCCTCTTCTAGGGGCAAATGGAAGGCATTTTAAAGAAATGGCCTGGAGAAGAAAT 2082154 Query 1159 CTGGTG-GGCACTTACATATTCTTCCATAAGTT--TTGAAAATGAGAACTGTAGTTCTGT 1215 ||| ||||||||| || |||| || |||| || | ||| | | ||| ||| Sbjct 2082155 CTGTAAAGGCACTTACGTAGTCTTGCAAAAGTCCCTTAGACATGGG--CCGTAATTCCAA 2082212 Query 1216 GATTACAGCTGATTGTATGTCCCGTGGT---AGTGGATGGCCG---------TGGGAGGA 1263 ||||| | | | | ||| | |||| ||| ||||| | ||||||| Sbjct 2082213 GATTAT---TTTTCGGACGTCACTTGGTTGTAGTCGATGGGTGGGTGCCATATGGGAGGG 2082269 Query 1264 GAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGCCCTGAAGATTTTGTAAAAAT 1323 ||||||| | | ||||||||||| |||||||||| || | || | || | ||| Sbjct 2082270 CAGCAAGGTTTCCATGCAGCAGAGCAGAAACAGGGCAAACCTGGCAGGTCCTGGAGAAAG 2082329 Query 1324 AGAGTAATGC------CCACACACCCCCACCTGCCCCATACCTTAACCTGCCCAAGCTTT 1377 | | | |||| |||| || || ||||| | || ||| || | Sbjct 2082330 AAAATGATGCTGTGGGCCACGTGGCCAGAC--GCCCCCTGCCCA------CCCCAGTTGC 2082381 Query 1378 CACCACCGAAGCTGTGCCGGA-------CTG----AGCCCCATCCAGTCTTTCTCTTTGT 1426 ||||||||||| || || ||| |||||| ||||| | | ||| | | Sbjct 2082382 AACCACCGAAGCCGTTGTTGAGCAACCACTGGCCAAGCCCC-TCCAGAGTCT-TCTCTAT 2082439 Query 1427 CTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGACCTATCGATACCTGAG 1486 | | | || |||| | | || | | || ||| ||| | | |||||| | Sbjct 2082440 CCAACGGGACAAGACCACGCTCATGA--AACA--GGCATCAGGGCACAGTAGTACCTGCG 2082495 Query 1487 GGGGATACTATAGCAGGAGAGAGCG---AGGCCGCCGCTTTGGCAACAGCTGCTAGAGTG 1543 |||| | || || |||||||| ||| | | ||| ||||||||| || ||| Sbjct 2082496 TGGGAGAGCATGGC--GAGAGAGCACACAGGGC-CTGCTCCAGCAACAGCTTCTGGAGCT 2082552 Query 1544 AGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAGG---AGGA 1600 |||||||||||| ||| | |||| | ||||||||||| |||||| ||| | || Sbjct 2082553 AGATGTGCTCGCCATAGACTCTGGGAGAT--ATATAAAGGGCCAGTTGTGAGGGAAAAGA 2082610 Query 1601 GCACTAAAAGTACCGCCCACGGTAAAGTCATTACTCAG-----------AAAACA-TTTC 1648 || | || || ||||||| || ||| ||||| ||||| |||||| |||| Sbjct 2082611 GCGATCAACGTCCCGCCCATGGCAAAATCATTGCTCAGCTTTTCTCCAGAAAACACTTTC 2082670 Query 1649 AAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAATG---AAGTTACCC 1705 || || |||| || ||| | ||||| | || |||||||||| | ||||||| Sbjct 2082671 AATATTCTGCCCCACGAGGCTGGGTGAAAGCGGGACTGGAAGGAAATGCTGAGGTTACCC 2082730 Query 1706 TTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGG---GCACCCACA 1756 | ||| ||||||||||| |||| || | || | |||||| || |||| |||| Sbjct 2082731 TCAAGGTGGGCAGATGCCTGACTCAGTACAGACACACACAGGAAAGCACACACA 2082784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438481152394000