Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq692 114 3e-20 seq331 105 1e-17 seq316 105 1e-17 seq969 95.1 2e-14 seq460 87.8 4e-12 seq438 86.0 1e-11 >seq692 Length=1323805 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 82613 AGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672 ||| || || || || || || || |||| | | | | || ||||| ||||| || || Sbjct 819853 AGTGGACTCCTTTTGAATGTTGTAGTCAGGCAAAGTACGTCCATCTTCCAGTTGCTTGCC 819912 Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 ||||||||| | || || | ||| ||||| ||| |||||||||| |||||||| ||||| Sbjct 819913 AGCAAAGATCAAACTCTGCTCATCAGGAGGAATTTCTTCCTTATCCTGAATCTTGGCTTT 819972 Query 82733 TACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792 | | |||| || ||||| ||||| || || | | | || ||||| ||||| | || Sbjct 819973 CATACTTTCTATTGTATCCGAGGGTTCAACCTCAACACTGATGGTCTTTCCTGTAAGGGT 820032 Query 82793 CTTTACAAATATCTGCAT 82810 || ||||| || ||||| Sbjct 820033 TTTCACAAAAATTTGCAT 820050 >seq331 Length=2979768 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||| ||||| ||||| || ||||| |||| ||||||||| Sbjct 1638175 CCATCTTCCAGTTGCTTGCCAGCCAAGATCAGTCTCTGATGATCAAGAGGAATTCCTTCC 1638234 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||| ||||| || ||||||||||| || |||| ||||| | || | ||| Sbjct 1638235 TTATCTTGGATCTTGGCCTTTACATTTTCTATTATATCCAAGGGTTCAATCTCGAGAGTG 1638294 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| || | || || || | | |||||||| Sbjct 1638295 ATAATCTTCCCCATAAAAGTTTTCATGGAAATCTGCAT 1638332 >seq316 Length=5774657 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || | ||||||| | | || ||||| ||||| Sbjct 2701268 TGAAGAGTGGACTCCTTTTGAATGCTACAGTCAGATAAAGTATGTCCATCTTCCAGTTGC 2701327 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || | || ||||| ||||| || ||||| ||||| |||||| |||||| |||||||| Sbjct 2701328 TTGCAAGAGAAGATCAGTCTGTGCTGATCAGGAGGAGTTCCTTTCTTATCCTGAATCTTG 2701387 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 || ||||||||||| || ||||| ||||| || || | ||| || |||| Sbjct 2701388 GCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGATCTT 2701440 >seq969 Length=292708 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || |||| ||||| ||||| || ||||| |||| | |||||| Sbjct 250821 CCATCTTCCAGTTGCTTGCCAGTGAAGATCAGTCTCTGATGATCAAGAGGAAGTCCTTCT 250880 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||| ||||| || ||||||||||| || ||||| ||||| | || | ||| Sbjct 250881 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAATCTCAAGAGTG 250940 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 || |||| || | || || || | | ||||||| Sbjct 250941 ATAATCTTCCCCATAAAAGTTTTCATGGAAATCTGCA 250977 >seq460 Length=4635380 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || |||||||| ||||| || || || ||| | ||| || || ||||| || Sbjct 1644203 GTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGTGGTTGTCCTCCAGCTGTTTGCCC 1644262 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 ||| | || || | | || || | || || || ||||| ||||| || || ||||| Sbjct 1644263 GCACA-ATCAGACGCCGCTGGTCAAGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTG 1644321 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || |||||||| | || || || | || || |||||||| || |||| Sbjct 1644322 ACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--CGTC 1644379 Query 82794 TTTACAAATATCTGCAT 82810 || |||||||||||||| Sbjct 1644380 TTCACAAATATCTGCAT 1644396 >seq438 Length=1899571 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | |||||||||| | || || || || || || ||||| || || ||| Sbjct 704965 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACCGTATTTTTTATCCTGAGG 704906 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | || ||||||||||| | ||| |||||||| | Sbjct 704905 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACACTG 704846 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | ||||| || |||| Sbjct 704845 TGGTGGATTGGAATTAAGTGGGTCGCCGGGGGACAAG 704809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981646266735837