Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq649 134 1e-26 seq460 100 3e-16 seq321 95.1 1e-14 seq88 87.8 2e-12 >seq649 Length=3559941 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || |||||||| | ||| | | | || || ||||||||||| Sbjct 3264176 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 3264118 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| || |||||||| ||||| || |||||| ||| Sbjct 3264117 TGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTT 3264058 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 3264057 CACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 3263998 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3263997 CTTCACGAAGATCTGCAT 3263980 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 3263949 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 3263891 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 3263890 CTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 3263831 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||| || || | Sbjct 3263830 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTTAGGG 3263771 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 3263770 TCTTCACGAAGATTTGCAT 3263752 >seq460 Length=4635380 Score = 100 bits (110), Expect = 3e-16 Identities = 144/198 (73%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| |||||||| || | ||| |||||| ||||| |||||| Sbjct 1644203 GTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGTGGTTGTCCTCCAGCTGTTTGCCC 1644262 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 || ||| || ||| ||||||| | |||||||| |||||||| ||| ||| || || Sbjct 1644263 GC-ACAATCAGACGCCGCTGGTCAAGCGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTTT 1644320 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || || ||| | || || ||| ||| ||||| | ||||| ||| ||||| || || Sbjct 1644321 GACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--CGT 1644378 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 1644379 CTTCACAAATATCTGCAT 1644396 >seq321 Length=5251196 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| |||||||| || || ||| | | || |||| ||||| |||| Sbjct 2386275 GGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCAG-CCTCCAGCTGTTTGC 2386217 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||||| |||| || |||||||| | || ||| |||| || ||||| ||| || | Sbjct 2386216 CCGCGAAAATCAGATGCTGCTGGACAGGTGGGGTGCCCTCTTTGTCTTGGATTTTGACTT 2386157 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| ||||| |||||| || || |||| || |||||| |||| | Sbjct 2386156 TGACATTGTCAGTGGTGTCACTGGGCTTGACCTCAGGGGTGGTGGCTTTGCCCATCAGGG 2386097 Query 133642 TTTTTACGAAAATCTG 133657 | || || || ||||| Sbjct 2386096 TCTTCACAAAGATCTG 2386081 >seq88 Length=12711478 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133460 TATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTT 133519 || ||||||||||||||| ||||||| || ||| | || || ||||| || Sbjct 2426622 TAGGGTGGACTCTTTCTGGGTATTGTAGTCTAATGAAGTGCAGCCATCTTCCAGCTGTTT 2426681 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 ||| || |||| || ||||||||||| || | |||||| |||||| | || |||| | Sbjct 2426682 GCCAGCAAAAATCAGACGCTGCTGGTCAGGCGAGATGCCCTCCTTGGC-TTGGACTTTGG 2426740 Query 133580 C-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | |||| | |||| ||||| ||||||| || || | || || ||| ||||| ||| Sbjct 2426741 CTTTGACATTCTCACTAGTGTCACTGGGCTCAACCTCAAGGGAGATGGTCTTGCCCATCA 2426800 Query 133639 GAGTTTTTACGAAAATCTGC 133658 || | || || |||||| Sbjct 2426801 AGGTCTCCACAAAGATCTGC 2426820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483333886982920