Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq386 329 4e-85 seq289 221 1e-52 seq597 129 7e-25 seq332 86.0 7e-12 >seq386 Length=6704978 Score = 329 bits (364), Expect = 4e-85 Identities = 638/933 (68%), Gaps = 19/933 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| || |||| ||| || | |||||||| || || | ||| ||| Sbjct 15334 CCAGGGCTTTATGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 15275 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || |||| ||| ||| ||| | | ||||| || | || || | Sbjct 15274 TGTCAAACTTGTTGGCAAACAAGTGGTGCT--TTCGT-AGCATCCAGTTCAAGTCACCTG 15218 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || ||||| || |||||||| || |||||||| ||||| || ||||||| | Sbjct 15217 CTCCGAAGACACACACAGAACGCACGTGGACCCCGCTGCAGGGCGGGTAGGGGGCCCCCT 15158 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| |||||||| |||||||| | || ||||||||||| | Sbjct 15157 TGGAGACATCACCTTCAAAGTACTGCCACTTGACGAACCTCGCAATCGCCTGCATGTCAG 15098 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||| ||||| | || | || || | || || || | || | ||||| | | Sbjct 15097 ACATGTCATACTTCTGG-CTTAGGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGGATA 15039 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || |||||||| || || || || | ||||||||| |||| | | Sbjct 15038 GTGGCCCAGAGATACTCATCTGGACTGTAAGTGTCTTTGGCCCACTCCATAAACTTCTGG 14979 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | | ||| || | ||| | || || || ||| | || | ||| || || || Sbjct 14978 ATCTTTTCATTCTCTAGCACATAGCCCACATACTTCCTACTGACCACAAAATAGGCACTG 14919 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || || |||| ||| | | ||||||| || |||||| ||||||||| | | Sbjct 14918 CCTGAGAACAGGGGCGTTTCAAGAGGAGGGTGCATTTTGTCCGTCCCCGTGTTGGTCAGC 14859 Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 |||| | || || ||| | ||| ||||||| | | ||| ||| | | Sbjct 14858 TTTCCATTAACAAC----TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCAT 14803 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 |||| |||||| |||| |||| || | || |||| || || ||||| || Sbjct 14802 TCTCTCGGACTCTAGGTTGTTTTCACCCATTAACGATTTGAGCTTCCGGACAATCTCCAG 14743 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| || || || ||||||| ||||| || | || |||| | | || Sbjct 14742 GTTGGTTTTAATAGGGAAATCCATGCCGCAAAGATTTATCAAGTACCTCCAGTCTGCACT 14683 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | | ||| || || || | ||||| || |||||||| || |||||||| || || || Sbjct 14682 CATCCTGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATA 14623 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| |||||||||| | | |||| || ||||| || ||| || || | || ||||| Sbjct 14622 CACCACGCTCTCCAGCTGACTGGCCACGAAGACGTTACTGAAGCAGGAGGCGATGCCCAT 14563 Query 162834 CAC---GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 ||| ||||| || | ||| || | ||| || || ||||| | |||||| ||||| Sbjct 14562 CACCGCGGCCAAAAAGGA-ATCC--TCTGATTTTCTGTCCACGTGAATGCAGTAGAGATT 14506 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| |||||||||||||| | || || | ||| || || || || || ||||| Sbjct 14505 CTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCAC 14446 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||||||||| ||||| ||||| ||||| || Sbjct 14445 TATAGAATACGCAATGGGAAACTCCGCCTCTTC 14413 >seq289 Length=10330243 Score = 221 bits (244), Expect = 1e-52 Identities = 242/322 (75%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| || || || || || ||||| ||||||||||| || | | Sbjct 9458897 CAGAGAGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCGGAACCAAAAGTATTGAAGAGGC 9458838 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| ||||||| |||||| ||||| || || | || || || ||| Sbjct 9458837 ACTTGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAATGTAATGGTTGAGTTCTTGA 9458778 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 || | || || || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 9458777 GTTCCAGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 9458718 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| |||||| || |||||||| || || | Sbjct 9458717 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCCTTGATTTTCTGCCATGTCACAA 9458658 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | |||| |||||||||||||| |||||||||||||||| | | Sbjct 9458657 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCT 9458598 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| ||||| || ||||| Sbjct 9458597 CTTCTTCATCTTGGGTCACCAC 9458576 Score = 111 bits (122), Expect = 2e-19 Identities = 175/249 (70%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 171505 AGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTT 171564 |||||| |||| | || | |||||||| ||||| || | ||| || ||||||| | Sbjct 9461612 AGTTTGCCTGACGCTGGTCATAGTCCCCAGGTGTAGCACCTGGCAGATTACCTCCT---T 9461556 Query 171565 TCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTT 171624 ||||| || || || || ||||| || || || | || || ||||| || ||||| || Sbjct 9461555 CCCCACCTGGCTCTTGGGGTCTTTGACCTGGAGGACACTCGTGACAGACGTGGTCCCATT 9461496 Query 171625 ACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 | ||| |||| | | |||||| ||||| || || || || | || ||||| | Sbjct 9461495 GGGGTGTGAGAGAA---TCTCAGTACTGTTTTCAATCCCTGACCCAGAGACCTTCCAGGA 9461439 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741 || ||||| ||||| | ||| | ||||||||||| || |||| |||||||| || Sbjct 9461438 GATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTACGTGGTCTTCGAAAAA 9461379 Query 171742 CTCATAGTG 171750 | |||||| Sbjct 9461378 TTTATAGTG 9461370 >seq597 Length=2725100 Score = 129 bits (142), Expect = 7e-25 Identities = 345/514 (67%), Gaps = 19/514 (4%) Strand=Plus/Plus Query 176967 TAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGAT 177026 || || | ||| |||||||| | ||| | || | ||||| || ||||| || || || Sbjct 563216 TAATCTTCCACATGAATGAATGAATCTGCTGGAATATAATTCTCATAATTTTCCCTAGAC 563275 Query 177027 GTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATA 177086 | || || || | || || | || || | || || |||||| ||||| || || Sbjct 563276 GGCCCCAGAACAACAGGGACAGAGCCGGCTAGAAAAGCATTGTAGAGCTTTTCTGTGATG 563335 Query 177087 TAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATA--GTAGCG 177144 || || |||| | ||||| ||||| | ||||| ||||| || | ||||| |||| Sbjct 563336 TAATCTTTGTGGATTGAGTTTTCAAAAGACAGATAAAATTTGCAAGTAGATATGGTAG-- 563393 Query 177145 GGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTA 177204 | || || | | ||| | ||| ||||| | | | | ||||||| ||| || || | Sbjct 563394 GAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTGCCCGTATGTATGGATTTCAA 563453 Query 177205 TGTGTTTACTGAGCTCTAGGTAGTATCTCGATC-TCACGTGGTCGTTGTTCCAATTGCTG 177263 || ||| || ||||| ||| || || || | || | || || ||||| || || Sbjct 563454 TGCTTTTGCTCAGCTCATTGTAATA-CTTGACCCTCGCATGCTCAGGATTCCAGTTACTT 563512 Query 177264 ACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGATTC-GATACTAATGCAGTGT 177321 ||||||||||| |||||||| |||||||| || || ||| | || || | || | Sbjct 563513 ACGACCCAGCACACTAACTT-CTCTTTGCTTGGCAC----TTCAAACACGAA-GGGGTTT 563566 Query 177322 CT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAAC 177380 | || | ||| | | ||||| ||||| || ||||| ||||| || | ||| || | Sbjct 563567 GTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGAGTCACGGCGGTAAGTCAGA 563626 Query 177381 GTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGGCTGTTACTGGGCGATTCTA 177438 || | ||||| |||| || || | || |||| ||| ||| | || ||||| | Sbjct 563627 GTCAAGTTGAACAGGTGCTCAATGCCACTCTTTTG--GGGCGTGTGGGTTGGTGATTCCA 563684 Query 177439 AGTTCATCCATATCCACTTTTGAAAGGTTGGTCT 177472 | |||||||| ||||| || || |||| ||| || Sbjct 563685 AATTCATCCAAATCCATTTCTGGAAGGGTGGCCT 563718 >seq332 Length=3629251 Score = 86.0 bits (94), Expect = 7e-12 Identities = 236/356 (66%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || ||| | | |||||| Sbjct 2552854 ACCATCTCGGCATTGGTCTTTATAGGAAAGTCTGTCCCACATGTATTTAGTAAGTATTTC 2552795 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||| | || | | || || | | ||| ||||| || ||||| || | Sbjct 2552794 CA--TGGCACTGGGCTCTGGAGCAAGTCTTCCATACAATTCAGGTCAGCCTGCACCCTGG 2552737 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| ||| || | Sbjct 2552736 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCCATGAAGACATTTGGGAAGCATG 2552677 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | |||| ||| ||||| | Sbjct 2552676 AAATAATTGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACGTGGAT 2552619 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||||| ||||||||||| || | || | || ||||| || || | ||||| || Sbjct 2552618 GCAGTATATGTTCTGAGGGGCATACACAGCTCGGAGCAATCTTTCAAAGTTTTCTATTTT 2552559 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 | || ||||| || || || || || ||||| || | ||| || | || |||| Sbjct 2552558 CTCATGGACCACCATTGAGTAGGCAATAGGGAAGTCTGACTCTTCTTGGCTCAGAG 2552503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578328005156800