Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq969 95.1 3e-14 seq692 95.1 3e-14 seq331 93.3 1e-13 seq649 91.5 3e-13 >seq969 Length=292708 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 206206 ATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAA 206265 |||||| | || | ||| || || ||| | ||| |||||| ||||| ||||| Sbjct 250942 ATCACTCTTGAGATTGAACCCTCAGATACAATAGAAAATGTAAAGGCCAAGATCCAAGAT 250883 Query 206266 AAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGAT 206325 ||||||||| || | || ||| ||||| |||||| | || ||||| |||||||| Sbjct 250882 AAAGAAGGACTTCCTCTTGATCATCAGAGACTGATCTTCACTGGCAAGCAACTGGAAGAT 250823 Query 206326 GGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||| | ||||| || |||||| | || || |||| |||||||| ||| | |||||| Sbjct 250822 GGATGTACTTT----GACTACAACATTCAAAAGTAGTCCACTCTTCATCTTATGTTGAGA 250767 Query 206386 CTTCG 206390 |||| Sbjct 250766 TTTCG 250762 >seq692 Length=1323805 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/207 (71%), Gaps = 10/207 (5%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||||||| || |||| | | || || ||| || || ||| | ||| | Sbjct 820035 AAAACCCTTACAGGAAAGACCATCAGTGTTGAGGTTGAACCCTCGGATACAATAGAA--A 819978 Query 206245 GTA---AAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 ||| |||| || |||||| || || |||| |||| || || | || || | ||| Sbjct 819977 GTATGAAAGCCAA-GATTCAGGATAAGGAAGAAATTCCTCCTGATGAGCAGAGTTTGATC 819919 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || || ||||| ||||||||||| | |||||| | || |||||| | || || ||| Sbjct 819918 TTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGCCTGACTACAACATTCAAAAGGAG 819859 Query 206362 TCTACTCTTCACCTTGTTTTGAGACTT 206388 || | ||||| || | ||||||||| Sbjct 819858 TC--CACTTCATCTCG--TTGAGACTT 819836 >seq331 Length=2979768 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| ||||| || ||||||||| | || ||| ||||| ||||| Sbjct 1638257 GTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCTTGATCATCAGAGACTGATCTTG 1638198 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | ||||| || |||||| | || || |||| Sbjct 1638197 GCTGGCAAGCAACTGGAAGATGGATGTACTTT----GACTACAACATTCAAAAGTAGTCC 1638142 Query 206365 ACTCTTCACCTTGTTTTGAGACTT 206388 | |||||| ||||| ||||||||| Sbjct 1638141 ATTCTTCATCTTGTGTTGAGACTT 1638118 >seq649 Length=3559941 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| ||||| Sbjct 3263767 AAGACCCTAACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAT 3263826 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || || ||||| Sbjct 3263827 GTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTCATCTTT 3263886 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 3263887 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 3263946 Query 206365 ACTCTTCACCTTGTTTTG 206382 || || ||||| ||| || Sbjct 3263947 ACCCTGCACCTGGTTCTG 3263964 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| ||||| Sbjct 3263995 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAT 3264054 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || || ||||| Sbjct 3264055 GTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTCATCTTT 3264114 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 3264115 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCC 3264174 Query 206365 ACTCTTCACCTTGTT 206379 ||||| || || ||| Sbjct 3264175 ACTCTCCATCTGGTT 3264189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181603011477743