Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1096 132 7e-26 seq117 127 3e-24 seq596 122 1e-22 seq859 84.2 3e-11 >seq1096 Length=651278 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || | Sbjct 434580 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCGCGTTTCT 434521 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | || ||||| |||||||||||||| ||||| ||||| ||||| | Sbjct 434520 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 434461 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| | |||||| Sbjct 434460 CCACAACCCGCTCTCC 434445 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || || || || | ||||||||||| || |||||||||||||| || || Sbjct 432399 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 432340 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 || || || || || ||||| | ||||||||||| || || ||| Sbjct 432339 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 432294 >seq117 Length=2247267 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || || || |||||||| ||||| | ||| Sbjct 1676624 TGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATAGAC 1676683 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 1676684 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 1676743 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 1676744 TTTCTTATACCAT 1676756 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | || || || ||||| | Sbjct 1704044 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACTGCAATCCTTGCTGCCA 1704103 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| |||| ||||| || |||| Sbjct 1704104 GGATGGCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTAT 1704163 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || |||||| || || || |||||||||| Sbjct 1704164 CTAGTTCCACAGTGGTGACCCCACTATATAAGCCCTGGATTACTTTCATGG 1704214 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || ||||||| | | | Sbjct 1686222 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACGCTGT 1686281 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | ||| || ||||||| || Sbjct 1686282 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 1686341 Query 69715 TCTAGATATATCGC 69728 || ||||| || || Sbjct 1686342 TCCAGATAAATAGC 1686355 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || || || ||||| || |||||||| ||||| Sbjct 1698457 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 1698516 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||||||| | || ||||| | |||||| || | | || | ||||||| Sbjct 1698517 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 1698576 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 1698577 ATATGCTGTGGTCTTTC 1698593 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||||| || ||||| ||||||||||| ||||||| |||||||||||||||||||| Sbjct 1685525 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 1685584 Query 69567 CATCAATGACCA 69578 |||||| ||||| Sbjct 1685585 CATCAAAGACCA 1685596 >seq596 Length=5634117 Score = 122 bits (134), Expect = 1e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 2857573 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTC 2857514 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| |||||||| || Sbjct 2857513 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCTGCAAAAGCC 2857454 Query 39761 AC 39762 || Sbjct 2857453 AC 2857452 Score = 86.0 bits (94), Expect = 9e-12 Identities = 95/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 ||||||| | || | ||||||||||||||| || |||||||| || |||||||| || | Sbjct 2848733 AACAAAAACCTTAC--CAAATTTTCATTCACAATGCCATCACTGGCTGCAAAAAAGGCTA 2848676 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 ||| || |||||||| || ||||| | | | | || ||||||| | || ||| | Sbjct 2848675 ATATGTGAGAGATAAAATACTTCTCATCAGATTTAAGCTTGTTCCAGTGAGGGAGATCCT 2848616 Query 40104 TTGATA 40109 |||||| Sbjct 2848615 TTGATA 2848610 >seq859 Length=171326 Score = 84.2 bits (92), Expect = 3e-11 Identities = 195/288 (68%), Gaps = 7/288 (2%) Strand=Plus/Plus Query 37411 TCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTATTTTA 37470 || |||| | | || |||| | | || ||||| || |||| ||| ||| | |||| || Sbjct 16868 TCTGGATCAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTTACTTCT 16927 Query 37471 AAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTCATCG 37530 || || ||| ||| ||| | || | || || | ||| | |||||||||||||| Sbjct 16928 AACTTTTCTTTGCCAGAATTAAATAGTACAACACCCACATTTCGTCTATAATCTTCATCT 16987 Query 37531 ATTACTCCGCCTCCTACATCAAT--ACCTTTTAG-AGACAAACCCGATCTAGGAGCTATT 37587 || ||||| ||||||||||| || | ||| | || || || || | ||||||| | Sbjct 16988 ATGACTCCCCCTCCTACATCTATGAAGTGTTTCGCAGCCAGGCCAGAACGGGGAGCTACT 17047 Query 37588 CTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCTTTCT 37647 |||||| |||| || | || ||| |||| ||| |||| | ||| | |||| | Sbjct 17048 CTTCCACAACACCCAGAAGGAAGAGCTATCTGAATGTCTATTTTCA-CAA-GGGCTTTTT 17105 Query 37648 CC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCG 37693 || ||| | | |||||||| || || || || | || || |||| Sbjct 17106 CCATAGGTGGTACTGTATAATCATAGGCACTGTACAGGTCGTAGCCCG 17153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686785302384120