Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1096 102 6e-17 seq596 95.1 1e-14 seq110 95.1 1e-14 >seq1096 Length=651278 Score = 102 bits (112), Expect = 6e-17 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| | ||||| || ||||| ||||| || |||||||| Sbjct 432283 CGGTTTAGCCAAGAAGTTCAGATTA-CTGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 432341 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| || ||||| ||||| || || || || ||||| |||||| Sbjct 432342 CATGGAAAACATCCATTCTGAGATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 432399 >seq596 Length=5634117 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 aaaaCCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| |||||||| |||||||| || ||||| | Sbjct 2867389 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTGGAAGGGAAAACAAATTTCTTTGAGA 2867448 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| |||| ||| ||||| || Sbjct 2867449 AACGAGTTGCAGAGTATCAACG 2867470 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||||| |||||||| Sbjct 2844262 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAAAAGGCACAGGCA 2844321 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 2844322 TCCTTCTGGACAGCAGAAGAGGT 2844344 >seq110 Length=1713729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | || ||||| ||||| || |||||||||| Sbjct 1660820 TGATGGCCCTGCCTCCGTGCCATGCTCTTTGCCAGTTCTACGTGGTGAACGGTGAACTGT 1660761 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || || ||||| |||||||| || || || || || ||||| || | Sbjct 1660760 CCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGTACCCTTCAACATCGCCA 1660701 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || | |||||||| || ||||| |||||| Sbjct 1660700 GCTACTCCCTGCTCACCTACATGATCGCACAC 1660669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397386328819915