Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq649 158 1e-33 seq316 113 5e-20 seq194 109 6e-19 seq460 105 8e-18 seq88 105 8e-18 seq226 104 3e-17 seq969 93.3 5e-14 seq672 93.3 5e-14 seq196 89.7 6e-13 seq1340 87.8 2e-12 seq41 87.8 2e-12 seq1258 86.0 7e-12 seq237 84.2 2e-11 >seq649 Length=3559941 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | || Sbjct 3263980 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3264039 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| ||||||| || || ||||| |||||||| || || ||||||||| Sbjct 3264040 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 3264099 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || || || | || || || Sbjct 3264100 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3264159 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||||| ||||| || | ||||| | ||||| Sbjct 3264160 ATCCAGAAAGAGTCCACTCTCCATCTGGTTCTTCGTCTGAGGGGTGG 3264206 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || |||||||| || || || ||||| ||| | | Sbjct 3263751 AATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 3263810 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | |||| ||||||| || || ||||| |||||||| || || |||||||| Sbjct 3263811 TGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCA 3263870 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| || || || | || || || Sbjct 3263871 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 3263930 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || || ||||||| | ||||| Sbjct 3263931 CATCCAGAAAGAGTCGACCCTGCACCTGGTTCTGCGTCTGAGGGGTGG 3263978 >seq316 Length=5774657 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27436 AAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATT 27495 |||| || ||||| |||||||| | |||| || | |||| | ||||| || ||| Sbjct 2701440 AAGATCATCACTCTCGAGGTTGAACCCTTGGATACAATAGAAAATGTAAAGGCCAAGATT 2701381 Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 ||||| ||| | |||| |||||| || ||||| | || || || || | |||||||| Sbjct 2701380 CAGGATAAGAAAGGAACTCCTCCTGATCAGCACAGACTGATCTTCTCTTGCAAGCAACTG 2701321 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 || |||| | ||| || | |||| || | |||||||| |||||||||||||| | Sbjct 2701320 GAAGATGGACATACTTTATCTGACTGTAGCATTCAAAAGGAGTCCACTCTTCATCTTCTG 2701261 Query 27616 TTGCGTCTTCGCGGTGG 27632 ||||| ||| | ||||| Sbjct 2701260 TTGCGACTTTGTGGTGG 2701244 >seq194 Length=5677166 Score = 109 bits (120), Expect = 6e-19 Identities = 157/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 || || || || || |||| || ||||| || |||||||||||||| | ||| Sbjct 189256 ATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTTGAGGTTGAACCTTCAAATACA 189197 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | |||| ||||||| || |||||||| | |||| || ||| || |||||| | Sbjct 189196 ATAGAAAATGTGAAGGCCAAGATTCAGGATCA----GGAACTCTTCCTGATCAGCAGAGA 189141 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 | || |||||||| |||||||| || |||| |||| | ||||| || | ||| Sbjct 189140 CCGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTT----GACTACAACATTCAA 189085 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| |||||||| ||||| || ||| | || | ||||| Sbjct 189084 AAGGAGTCCACTCTCCATCTTGTGTTGGGACTCTGTGGTGG 189044 >seq460 Length=4635380 Score = 105 bits (116), Expect = 8e-18 Identities = 143/197 (73%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||| | |||||||| || || ||||| |||||| | | Sbjct 1644396 ATGCAGATATTTGTGAAGACGGATG--GGCAAGACCATCACCCTTGACGTTGAGACCAAT 1644339 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | || || ||||| || ||||||||||| || || | |||||| Sbjct 1644338 GATACCATGGAGAAGGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCTTGACCAG 1644279 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | |||||| | || ||| || || || || ||||| | | || || ||||||| ||| Sbjct 1644278 CGGCGTCTGA-TTGTGCGGGCAAACAGCTGGAGGACAACCACACTCTCTCAGACTACAAT 1644220 Query 27586 GTCCAAAAGGAATCCAC 27602 |||| || || ||||| Sbjct 1644219 ATCCAGAAAGAGTCCAC 1644203 >seq88 Length=12711478 Score = 105 bits (116), Expect = 8e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 ||| |||||||| |||| | | |||||||| || | |||||||||||| | |||| Sbjct 2426820 GCAGATCTTTGTGGAGACCTTGATGGGCAAGACCATCTCCCTTGAGGTTGAGCCCAGTGA 2426761 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | | || ||| | || || ||| | || | ||||||||| || | || |||||||| Sbjct 2426760 CACTAGTGAGAATGTCAAAGCCAAAGTCCAAGCCAAGGAGGGCATCTCGCCTGACCAGCA 2426701 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 |||||| ||||||||||| || || || || |||| | || | |||||| ||| Sbjct 2426700 GCGTCTGATTTTTGCTGGCAAACAGCTGGAAGATGGCTGCACTTCATTAGACTACAATAC 2426641 Query 27588 CCAAAAGGAATCCACTCT 27605 ||| || || ||||| || Sbjct 2426640 CCAGAAAGAGTCCACCCT 2426623 >seq226 Length=3090976 Score = 104 bits (114), Expect = 3e-17 Identities = 145/201 (72%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 ||||||||||| ||||| || | |||||||| || || || |||| ||| | |||| Sbjct 1604444 CAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCAAGGTCGAGCCCAGTGAC 1604385 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 | || || ||| || || ||||| || ||||||||||| || | || ||||||||| Sbjct 1604384 ACCACTGAGAATGGCAAAGCCAAAATCCAAGACAAGGAGGGCATCCTGCCTGACCAGCAG 1604325 Query 27529 CGTCTAATTTTTGCTGG-TAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 | ||| |||||||| || || || || ||||| | || | || ||||| | ||| | Sbjct 1604324 CATCTGATTTTTGCAGGACAAACAGCTGGAGGACGGCCGCCCTCTCCCAGACCACAATAT 1604265 Query 27588 CCAAAAGGAATCCACTCTTCA 27608 ||| | || ||||| || || Sbjct 1604264 CCAGA--GAGTCCACCCTGCA 1604246 >seq969 Length=292708 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || |||| ||| ||||||||| |||| | |||| || | |||| | ||||| || Sbjct 250951 GGGAAGATTATCACTCTTGAGATTGAACCCTCAGATACAATAGAAAATGTAAAGGCCAAG 250892 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || || || || || ||| |||||| || || ||| | || || || |||| |||||| Sbjct 250891 ATCCAAGATAAAGAAGGACTTCCTCTTGATCATCAGAGACTGATCTTCACTGGCAAGCAA 250832 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || |||| |||| | ||||| || | |||||| | |||||||||||||| Sbjct 250831 CTGGAAGATGGATGTACTTT----GACTACAACATTCAAAAGTAGTCCACTCTTCATCTT 250776 Query 27613 GTCTTGCGTCTTCGCGGTG 27631 | ||| | |||| |||| Sbjct 250775 ATGTTGAGATTTCGTGGTG 250757 >seq672 Length=2078510 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||| |||| || || ||| |||| || | ||||||| |||| | | Sbjct 117474 ATGCAGATCTTTGCGGAGACCCTGACGGGCGAGACCATCGCCCTTGAGGCTGAGCCCA-T 117416 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | | || | ||| || |||||||||| || || || |||||| Sbjct 117415 GACACCACTGAGAATGTCAGAGCCACAATCCAAGACAAGGAGGCCATCCCGCCTGACCAG 117356 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||| || || | || || || |||| | | ||||| ||||||| ||| Sbjct 117355 CAGCGTCTGCTTTCTGTGGGCACACAGCTAGATGATGGTTGCACCCTCTCAGACTACAAT 117296 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 || || || ||||| || || Sbjct 117295 ACGCAGAAAGAGTCCACCCTGCA 117273 >seq196 Length=3934615 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 2749282 ATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 2749223 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || || ||||| || ||||||||||| Sbjct 2749222 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 2749179 >seq1340 Length=194060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/188 (70%), Gaps = 10/188 (5%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||| | || | || |||||||| || || |||| || || Sbjct 124035 ATGCAGATCTTTGTGAAGCCTCTGATGGGTAAGACTATCACCCTCAAGGTCAAGCCAC-- 124092 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||| | || | ||||| || ||||||||||| || || || ||||| Sbjct 124093 --------TGAGAATGTCAAAACCAAAATCCAAGACAAGGAGGGCATCCCACCTCACCAG 124144 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||| || || || || ||||||| || || || ||| ||| ||| Sbjct 124145 CAGCGTCTCATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACAAT 124204 Query 27586 GTCCAAAA 27593 |||| || Sbjct 124205 CTCCAGAA 124212 >seq41 Length=3493823 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/219 (70%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || |||| | |||| || |||||||||| | | | Sbjct 3080703 ATGCAGATTTTCGTGAAAACCCTTATGGAGAAGATCATCACTCTTGAGGCTAAACCCTCA 3080762 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| | | |||| ||||||| || |||||||| ||||| ||||||||| | || Sbjct 3080763 AATACAACAGAAAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCT---GGTCAT 3080819 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| ||||||| || |||| ||| || ||||| || Sbjct 3080820 TAGAGACTGATCTTTGCTGG-AAGCAACCGGAAGATGGATATACTCT----GACTACAAC 3080874 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624 | |||||||| ||||||||||||| || ||| | ||| Sbjct 3080875 -TGCAAAAGGAGCCCACTCTTCATCTTGTGTTGAGACTT 3080912 >seq1258 Length=1002507 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| || | |||||||||||||| || || ||| | ||||| || ||||| Sbjct 840101 ACTATTGTGAATTTGGCTCAGAACTTTGTGGGAAGTAACAACATTAACTTGCTTCAGCCA 840042 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || ||||| |||||||| |||||||| ||| | ||||| || Sbjct 840041 ATTGGTCAGTTTGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTATATT 839982 Query 32245 TTCAC 32249 ||||| Sbjct 839981 TTCAC 839977 >seq237 Length=6466188 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | || || || || || |||| || ||||| || |||| ||||||||| | Sbjct 3227412 ATGTAGATTTTCGTGAAAACCCTTATAGGGAAGACCATCTCTCTAGAGGTTGAGCCCTCG 3227353 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| || | ||| | || | ||||| | || |||||||||||| |||| || ||| Sbjct 3227352 GATGCAATAGAAAAGGTAAAAACCAAAATCCGGGGTAAGGAGGGAATTTCTCCTGATCAG 3227293 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||||||| |||||||| || | || |||| | | |||| || Sbjct 3227292 CA-CAACCTGGTTTTGCTGGCAAGCAACTGGAAGTTGGATGTACTTTTTCTAACTACAAC 3227234 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | |||||| |||||||| |||| || ||| ||||| ||||| Sbjct 3227233 ATTCGAAAGGAGTCCACTCT--ATCTTGTGTTGAAACTTCGTGGTGG 3227189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570207865318960