Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13]
14,383 sequences; 2,372,553,907 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq649 158 1e-33
seq316 113 5e-20
seq194 109 6e-19
seq460 105 8e-18
seq88 105 8e-18
seq226 104 3e-17
seq969 93.3 5e-14
seq672 93.3 5e-14
seq196 89.7 6e-13
seq1340 87.8 2e-12
seq41 87.8 2e-12
seq1258 86.0 7e-12
seq237 84.2 2e-11
>seq649
Length=3559941
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | ||
Sbjct 3263980 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3264039
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | |||| ||||||| || || ||||| |||||||| || || |||||||||
Sbjct 3264040 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 3264099
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || ||||| || ||||| || || |||| || || || | || || ||
Sbjct 3264100 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3264159
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || |||||||| ||||| || | ||||| | |||||
Sbjct 3264160 ATCCAGAAAGAGTCCACTCTCCATCTGGTTCTTCGTCTGAGGGGTGG 3264206
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| || || |||||||| || || || ||||| ||| | |
Sbjct 3263751 AATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 3263810
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | |||| ||||||| || || ||||| |||||||| || || ||||||||
Sbjct 3263811 TGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCA 3263870
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || ||||| || ||||| || || |||| || || || | || || ||
Sbjct 3263871 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 3263930
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || || || || || || ||||||| | |||||
Sbjct 3263931 CATCCAGAAAGAGTCGACCCTGCACCTGGTTCTGCGTCTGAGGGGTGG 3263978
>seq316
Length=5774657
Score = 113 bits (124), Expect = 5e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27436 AAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATT 27495
|||| || ||||| |||||||| | |||| || | |||| | ||||| || |||
Sbjct 2701440 AAGATCATCACTCTCGAGGTTGAACCCTTGGATACAATAGAAAATGTAAAGGCCAAGATT 2701381
Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555
||||| ||| | |||| |||||| || ||||| | || || || || | ||||||||
Sbjct 2701380 CAGGATAAGAAAGGAACTCCTCCTGATCAGCACAGACTGATCTTCTCTTGCAAGCAACTG 2701321
Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615
|| |||| | ||| || | |||| || | |||||||| |||||||||||||| |
Sbjct 2701320 GAAGATGGACATACTTTATCTGACTGTAGCATTCAAAAGGAGTCCACTCTTCATCTTCTG 2701261
Query 27616 TTGCGTCTTCGCGGTGG 27632
||||| ||| | |||||
Sbjct 2701260 TTGCGACTTTGTGGTGG 2701244
>seq194
Length=5677166
Score = 109 bits (120), Expect = 6e-19
Identities = 157/221 (71%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471
|| || || || || |||| || ||||| || |||||||||||||| | |||
Sbjct 189256 ATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTTGAGGTTGAACCTTCAAATACA 189197
Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531
|| | |||| ||||||| || |||||||| | |||| || ||| || |||||| |
Sbjct 189196 ATAGAAAATGTGAAGGCCAAGATTCAGGATCA----GGAACTCTTCCTGATCAGCAGAGA 189141
Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591
| || |||||||| |||||||| || |||| |||| | ||||| || | |||
Sbjct 189140 CCGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTT----GACTACAACATTCAA 189085
Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| |||||||| ||||| || ||| | || | |||||
Sbjct 189084 AAGGAGTCCACTCTCCATCTTGTGTTGGGACTCTGTGGTGG 189044
>seq460
Length=4635380
Score = 105 bits (116), Expect = 8e-18
Identities = 143/197 (73%), Gaps = 3/197 (2%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| |||||| | |||||||| || || ||||| |||||| | |
Sbjct 1644396 ATGCAGATATTTGTGAAGACGGATG--GGCAAGACCATCACCCTTGACGTTGAGACCAAT 1644339
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | || || ||||| || ||||||||||| || || | ||||||
Sbjct 1644338 GATACCATGGAGAAGGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCTTGACCAG 1644279
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
| |||||| | || ||| || || || || ||||| | | || || ||||||| |||
Sbjct 1644278 CGGCGTCTGA-TTGTGCGGGCAAACAGCTGGAGGACAACCACACTCTCTCAGACTACAAT 1644220
Query 27586 GTCCAAAAGGAATCCAC 27602
|||| || || |||||
Sbjct 1644219 ATCCAGAAAGAGTCCAC 1644203
>seq88
Length=12711478
Score = 105 bits (116), Expect = 8e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467
||| |||||||| |||| | | |||||||| || | |||||||||||| | ||||
Sbjct 2426820 GCAGATCTTTGTGGAGACCTTGATGGGCAAGACCATCTCCCTTGAGGTTGAGCCCAGTGA 2426761
Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527
| | || ||| | || || ||| | || | ||||||||| || | || ||||||||
Sbjct 2426760 CACTAGTGAGAATGTCAAAGCCAAAGTCCAAGCCAAGGAGGGCATCTCGCCTGACCAGCA 2426701
Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587
|||||| ||||||||||| || || || || |||| | || | |||||| |||
Sbjct 2426700 GCGTCTGATTTTTGCTGGCAAACAGCTGGAAGATGGCTGCACTTCATTAGACTACAATAC 2426641
Query 27588 CCAAAAGGAATCCACTCT 27605
||| || || ||||| ||
Sbjct 2426640 CCAGAAAGAGTCCACCCT 2426623
>seq226
Length=3090976
Score = 104 bits (114), Expect = 3e-17
Identities = 145/201 (72%), Gaps = 3/201 (1%)
Strand=Plus/Minus
Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468
||||||||||| ||||| || | |||||||| || || || |||| ||| | ||||
Sbjct 1604444 CAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCAAGGTCGAGCCCAGTGAC 1604385
Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528
| || || ||| || || ||||| || ||||||||||| || | || |||||||||
Sbjct 1604384 ACCACTGAGAATGGCAAAGCCAAAATCCAAGACAAGGAGGGCATCCTGCCTGACCAGCAG 1604325
Query 27529 CGTCTAATTTTTGCTGG-TAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587
| ||| |||||||| || || || || ||||| | || | || ||||| | ||| |
Sbjct 1604324 CATCTGATTTTTGCAGGACAAACAGCTGGAGGACGGCCGCCCTCTCCCAGACCACAATAT 1604265
Query 27588 CCAAAAGGAATCCACTCTTCA 27608
||| | || ||||| || ||
Sbjct 1604264 CCAGA--GAGTCCACCCTGCA 1604246
>seq969
Length=292708
Score = 93.3 bits (102), Expect = 5e-14
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492
|| |||| ||| ||||||||| |||| | |||| || | |||| | ||||| ||
Sbjct 250951 GGGAAGATTATCACTCTTGAGATTGAACCCTCAGATACAATAGAAAATGTAAAGGCCAAG 250892
Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|| || || || || ||| |||||| || || ||| | || || || |||| ||||||
Sbjct 250891 ATCCAAGATAAAGAAGGACTTCCTCTTGATCATCAGAGACTGATCTTCACTGGCAAGCAA 250832
Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612
|| || |||| |||| | ||||| || | |||||| | ||||||||||||||
Sbjct 250831 CTGGAAGATGGATGTACTTT----GACTACAACATTCAAAAGTAGTCCACTCTTCATCTT 250776
Query 27613 GTCTTGCGTCTTCGCGGTG 27631
| ||| | |||| ||||
Sbjct 250775 ATGTTGAGATTTCGTGGTG 250757
>seq672
Length=2078510
Score = 93.3 bits (102), Expect = 5e-14
Identities = 143/203 (70%), Gaps = 1/203 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||||| |||| || || ||| |||| || | ||||||| |||| | |
Sbjct 117474 ATGCAGATCTTTGCGGAGACCCTGACGGGCGAGACCATCGCCCTTGAGGCTGAGCCCA-T 117416
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || || ||| | | || | ||| || |||||||||| || || || ||||||
Sbjct 117415 GACACCACTGAGAATGTCAGAGCCACAATCCAAGACAAGGAGGCCATCCCGCCTGACCAG 117356
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||| || || | || || || |||| | | ||||| ||||||| |||
Sbjct 117355 CAGCGTCTGCTTTCTGTGGGCACACAGCTAGATGATGGTTGCACCCTCTCAGACTACAAT 117296
Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608
|| || || ||||| || ||
Sbjct 117295 ACGCAGAAAGAGTCCACCCTGCA 117273
>seq196
Length=3934615
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || || ||||||||| | ||
Sbjct 2749282 ATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 2749223
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||||| ||| | || || ||||| || |||||||||||
Sbjct 2749222 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 2749179
>seq1340
Length=194060
Score = 87.8 bits (96), Expect = 2e-12
Identities = 131/188 (70%), Gaps = 10/188 (5%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||| | || | || |||||||| || || |||| || ||
Sbjct 124035 ATGCAGATCTTTGTGAAGCCTCTGATGGGTAAGACTATCACCCTCAAGGTCAAGCCAC-- 124092
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| ||| | || | ||||| || ||||||||||| || || || |||||
Sbjct 124093 --------TGAGAATGTCAAAACCAAAATCCAAGACAAGGAGGGCATCCCACCTCACCAG 124144
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||||| || || || || ||||||| || || || ||| ||| |||
Sbjct 124145 CAGCGTCTCATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACAAT 124204
Query 27586 GTCCAAAA 27593
|||| ||
Sbjct 124205 CTCCAGAA 124212
>seq41
Length=3493823
Score = 87.8 bits (96), Expect = 2e-12
Identities = 153/219 (70%), Gaps = 9/219 (4%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || || || |||| | |||| || |||||||||| | | |
Sbjct 3080703 ATGCAGATTTTCGTGAAAACCCTTATGGAGAAGATCATCACTCTTGAGGCTAAACCCTCA 3080762
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| | | |||| ||||||| || |||||||| ||||| ||||||||| | ||
Sbjct 3080763 AATACAACAGAAAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCT---GGTCAT 3080819
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || |||||||| ||||||| || |||| ||| || ||||| ||
Sbjct 3080820 TAGAGACTGATCTTTGCTGG-AAGCAACCGGAAGATGGATATACTCT----GACTACAAC 3080874
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624
| |||||||| ||||||||||||| || ||| | |||
Sbjct 3080875 -TGCAAAAGGAGCCCACTCTTCATCTTGTGTTGAGACTT 3080912
>seq1258
Length=1002507
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
|| ||||| || | |||||||||||||| || || ||| | ||||| || |||||
Sbjct 840101 ACTATTGTGAATTTGGCTCAGAACTTTGTGGGAAGTAACAACATTAACTTGCTTCAGCCA 840042
Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244
||| |||||||| || ||||| |||||||| |||||||| ||| | ||||| ||
Sbjct 840041 ATTGGTCAGTTTGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTATATT 839982
Query 32245 TTCAC 32249
|||||
Sbjct 839981 TTCAC 839977
>seq237
Length=6466188
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/227 (69%), Gaps = 3/227 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||| | || || || || || |||| || ||||| || |||| ||||||||| |
Sbjct 3227412 ATGTAGATTTTCGTGAAAACCCTTATAGGGAAGACCATCTCTCTAGAGGTTGAGCCCTCG 3227353
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| || | ||| | || | ||||| | || |||||||||||| |||| || |||
Sbjct 3227352 GATGCAATAGAAAAGGTAAAAACCAAAATCCGGGGTAAGGAGGGAATTTCTCCTGATCAG 3227293
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | | ||||||||| |||||||| || | || |||| | | |||| ||
Sbjct 3227292 CA-CAACCTGGTTTTGCTGGCAAGCAACTGGAAGTTGGATGTACTTTTTCTAACTACAAC 3227234
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | |||||| |||||||| |||| || ||| ||||| |||||
Sbjct 3227233 ATTCGAAAGGAGTCCACTCT--ATCTTGTGTTGAAACTTCGTGGTGG 3227189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570207865318960
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