Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq688 187 2e-42 seq110 141 8e-29 >seq688 Length=229267 Score = 187 bits (206), Expect = 2e-42 Identities = 427/636 (67%), Gaps = 20/636 (3%) Strand=Plus/Plus Query 34217 GAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTG 34276 |||||||| |||||||| || |||| ||| | || |||||| || | |||||| ||||| Sbjct 106284 GAATTTCCTCTGCTGACAACCAAACCTGTATCCTAGAAGGGTGTTTTGGAGGAGTTGCTG 106343 Query 34277 TGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGG 34336 ||||| | | ||| |||| ||| | ||| || || ||| ||| ||||| |||||| Sbjct 106344 TGGTTTATCAAGGGATCCACAAACGCTTGGGAACTGTCTTCCAAGGGAGTGAAAATCTGG 106403 Query 34337 GACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCC-CATCTCGGGAGGAGGG 34395 ||| | | ||||| ||||| | |||||| || || ||| || | | || |||| Sbjct 106404 GACTCAAATGGGTCCTGAGACCTCTTGGACA-GCCGGTATTCTGCAACAGAGAAGAAGGG 106462 Query 34396 CGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAG 34455 ||||| ||||| || || || ||||||| | | || || | Sbjct 106463 -GACTTAGGCCCAGTTTATAACTTTCAGTGGAAAATA-------CAAAG-ATAAGA---- 106509 Query 34456 CGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAA 34515 | | || ||||| || || |||| ||||| ||||| | |||| ||||| | || Sbjct 106510 --ATTCAGATTATTCTGGTCAAGGAGTAGACCAACTGCAAAAGGTGACTGACACAATCAA 106567 Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575 ||| |||||||||||| ||| | |||| | |||||| || || ||||| ||| | Sbjct 106568 AACCAACTGTGATGACAGAAGAATCATCCTGTGTGGGTGGAATCCAAAAGATCTTCCTTT 106627 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 ||||| ||| | | ||||| |||| ||||| |||||| | | ||||| |||||||| Sbjct 106628 AATGGC--TCCTCTC-TGCCATTCCCTTTGCCAGTTCTACCTGGAAAATGGTGAGCTGTC 106684 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||| ||||| || | | || ||||||||||| | | ||||| | || | | || Sbjct 106685 CTGTCAGCTGTACCGGAGCTCAGGAGACATGGGCCTGGTTGTGCCCTCCAGTGTCACCAG 106744 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 || || |||||||| |||| ||| | || || || || || || | | Sbjct 106745 CTATGCCCTGCTCACCTACAGGATGGTACACATCACAGGCCTGAAGCCCAATGACTTCAT 106804 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCT 34815 ||||| ||||| ||||| ||||| ||||||| || | |||| ||| || ||||| Sbjct 106805 ACATACTTTGGGAGATGCACATATTTACCTGAGTCATGTTGAGCTGCTGAAAATGCAGCT 106864 Query 34816 GCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 || |||| || | || |||| |||| || || Sbjct 106865 TCAGTGAGAACCAAGGCCTTTCCAGAAGCTTAAGAT 106900 Score = 187 bits (206), Expect = 2e-42 Identities = 427/636 (67%), Gaps = 20/636 (3%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 || || |||| |||| || | || |||| || ||||| || ||| |||| | Sbjct 106900 ATCTTAAGCTTCTGGAAAGGCCTTGGTTCTCACTGAAGCTGCATTTTCAGCAGCTCAACA 106841 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || ||||||| ||||| ||||| ||||| ||||| | | || || || || Sbjct 106840 TGACTCAGGTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCATTGGGCTTCAGGCCT 106781 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 || || | ||| |||| |||||||| || || || | | || | ||||| | Sbjct 106780 GTGATGTGTACCATCCTGTAGGTGAGCAGGGCATAGCTGGTGACACTGGAGGGCACAACC 106721 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 | ||||||||||| || | | || ||||| ||||||||||| ||||| | | |||| Sbjct 106720 AGGCCCATGTCTCCTGAGCTCCGGTACAGCTGACAGGACAGCTCACCATTTTCCAGGTAG 106661 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || ||||| |||| ||||| | | ||| ||||| | ||| ||||| || || |||||| Sbjct 106660 AACTGGCAAAGGGAATGGCA-GAGAGGA--GCCATTAAAGGAAGATCTTTTGGATTCCAC 106604 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 | |||| | ||| |||||||||||| ||| || | ||||| |||| | ||| Sbjct 106603 CCACACAGGATGATTCTTCTGTCATCACAGTTGGTTTTGATTGTGTCAGTCACCTTTTGC 106544 Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAG 6913 || ||||| |||| || || ||||| || | | | || || | Sbjct 106543 AGTTGGTCTACTCCTTGACCAGAATAATCTGAAT------TCTTAT-CTTTG-------T 106498 Query 6914 TGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG-GGAACCC 6972 | ||||||| || || || ||||| ||||| |||| || | | || ||| | Sbjct 106497 ATTTTCCACTGAAAGTTATAAACTGGGCCTAAGTC-CCCTTCTTCTCTGTTGCAGAATAC 106439 Query 6973 CCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGA 7032 | || |||||| | ||||| ||||| | | ||||||||| ||||| ||| ||| || Sbjct 106438 CGGC-TGTCCAAGAGGTCTCAGGACCCATTTGAGTCCCAGATTTTCACTCCCTTGGAAGA 106380 Query 7033 GAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTT 7092 || ||| | ||| |||| ||| | | |||||||||| |||||| | || ||||| Sbjct 106379 CAGTTCCCAAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTT 106320 Query 7093 CCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTC 7128 | || | ||| |||| || |||||||| |||||||| Sbjct 106319 CTAGGATACAGGTTTGGTTGTCAGCAGAGGAAATTC 106284 >seq110 Length=1713729 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| | ||| || || |||||||| || || || | ||| Sbjct 1660670 TGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGTACACCCAGGCCC 1660729 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || || |||||||||||||| || || ||| | |||||||| ||| Sbjct 1660730 ATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGTTCACCGTTCACCACGTAGAACTGG 1660789 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | |||||||| || || ||||||||||| ||||| Sbjct 1660790 CAAAGAGCATGGCACGGAGGCAGGGCCATCAGAGGAAGATC 1660830 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || |||||||| | || ||||| |||||||| | ||| Sbjct 1660830 GATCTTCCTCTGATGGCCCTGCCTCCGTGCCATGCTCTTTGCCAGTTCTACGTGGTGAAC 1660771 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || || |||||||||||||| || || | || ||||||||||| | || || || ||| Sbjct 1660770 GGTGAACTGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGTACCCTTC 1660711 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||| | |||||||| ||||||||||| || Sbjct 1660710 AACATCGCCAGCTACTCCCTGCTCACCTACATGATCGCACA 1660670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448181808023760