Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq307 208 6e-49 seq289 181 9e-41 seq185 150 1e-31 seq74 122 7e-23 seq688 93.3 3e-14 >seq307 Length=5409467 Score = 208 bits (230), Expect = 6e-49 Identities = 383/555 (69%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 ||||||||||||| || || || | || |||||||| || || || || | ||||| Sbjct 1577987 CTAAACTGTATTGTCGCCGTGTCCCAGAACATGGGCATCGGCAAGAATGGGGACCTGCCC 1578046 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT- 2256 ||||| || || | |||||||| || |||| |||| |||||| | | || || | Sbjct 1578047 TGGCCGCCGCTCAGGAATGAATTAAAGTATTTCCAAAGAATGACCACAACCTCATCAGTA 1578106 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||||||||| || |||||| || Sbjct 1578107 GAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAAGAAG 1578166 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAG-ACACCTTAAAGAGCCACC 2375 | | ||||| || ||||||| ||| | ||||||||||| | |||| | || || || Sbjct 1578167 AACCAACCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAAAACCTCCAGGAACCTCC 1578226 Query 2376 ACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGA-C 2434 || || || | ||| |||| |||||| | ||| | || | || |||| || | | Sbjct 1578227 ACAAGGAACTTATTTTCTTGCTAAAAGTCTGGATGATGCCTTAAAACTTAT-TGAGCAGC 1578285 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | ||||| | | ||||| || | || || || ||||| ||| ||| Sbjct 1578286 CAGAATTAGCACATAAAGTGGACATGGTTTGGGTAGTGGGAGGCAGTTCTGTTTATAAGG 1578345 Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 | ||| | || | || | | | || || | |||||| || |||| |||||| Sbjct 1578346 AAGCCATGAACAGGCCAGGCCATCTTAGACTACTTGTGACAAGGCTTATGCAGGAATTTG 1578405 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || |||| |||| || ||| || || || | ||||| |||| || | |||| | Sbjct 1578406 AAAGTGACACATTTTTTCCATAAGTTGATTTGGAGAAATATAAACTTCTCCCAGAATACC 1578465 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 ||||||||| |||| | || || || || || |||| ||||||||||| | |||| Sbjct 1578466 CAGGTGTTCTTTCTGATATCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTGTATG 1578525 Query 2675 aaaaaaaaaCATAAT 2689 | || || | |||| Sbjct 1578526 AGAAGAACAATTAAT 1578540 >seq289 Length=10330243 Score = 181 bits (200), Expect = 9e-41 Identities = 187/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||| | || || ||||||||||||||||| ||| Sbjct 9458648 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTAAGCCCAGAAAACATGGTCACC 9458707 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || |||| |||||||| || ||||| || || || || || || ||||| || Sbjct 9458708 TTCAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAACATCACC 9458767 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| | ||| | ||| |||| || || |||||||| || || |||| ||||||||| Sbjct 9458768 CAGCTGGAACTCAAGAACTCAACCATTACATTCTGGAATACCACCCTGGAGGATGAAGGG 9458827 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||||||| | || || |||||||| || |||||||| ||||||| || || || Sbjct 9458828 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAGATCTCAGGAAAAGCCTGCCTC 9458887 Query 1521 ACCCT 1525 ||||| Sbjct 9458888 ACCCT 9458892 >seq185 Length=4399659 Score = 150 bits (166), Expect = 1e-31 Identities = 372/556 (67%), Gaps = 19/556 (3%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| |||| ||||| || | || | |||||| | || || || ||| Sbjct 181044 CTAAACTGCATTGTCGCTGTGTCCCAGAACAAGGGCATCTGCAAGAACGGGGGCGTGCTG 181103 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAA----AC-ATTTTCAAAAAATGACATCTTCTTCCA 2254 | ||| || || | |||||||| || || |||| | || |||||| | |||||| Sbjct 181104 TAGCCCCCGCTCAGGAATGAATTCAAGTACACTATTTCCCAAGAATGACCACATCTTCCT 181163 Query 2255 CT--GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCAT 2312 | || || || | | | || |||||||| || ||||||||||| || |||||| Sbjct 181164 CATAGAACATAAGCAAACTTTAGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAA 181223 Query 2313 TAA-AAGCAGGCCTTTGAAC-AACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAG 2370 || || ||| ||||| || || ||||| ||| | ||||||||| || |||||||||| Sbjct 181224 GAAGAATCAG-CCTTTAAAGGAAAAGAATTAATTTAGTTCTCAGTTGAGACCTTAAAGAA 181282 Query 2371 CCACCACGTGGGGCTCACTTTG-TTGCAAAAAGTATAGATCACGCTCTGGAAATTATAAT 2429 || || | | ||||| ||| |||| |||||| | | | || | || |||| Sbjct 181283 CCTCCCCAAGAAGCTCATTTTTCTTGCCAAAAGTCTGGTCAATGCCTTAAAAGTTATT-- 181340 Query 2430 AGGACCA----GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTG 2485 || || |||||| | | | ||||| | | |||||||| | | || || |||| Sbjct 181341 --GAGCAATTGGAATTAGCAAATAAAGTGGACATGGTTTGGATAGTGGAAGGCAGTTCTG 181398 Query 2486 TCTATGAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGC 2545 | ||| |||| | || | | | | || | | | || ||| | ||||||||| ||| Sbjct 181399 TTTATAAGGAAACCACGAAGAAACCAGGCCACCTTAGACTATTTGTGACAAGGATTATGC 181458 Query 2546 AAAAATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTA 2605 | ||||||||| |||| ||| || ||||| || || | ||||| |||| | Sbjct 181459 AGAAATTTGAAAGTGACACACTTTTTCCAGACTTTGATTTGGAGAAATATAAACTTCCCC 181518 Query 2606 CTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTG 2665 | | || |||||| ||| |||| || || || || || || ||| |||||||||| Sbjct 181519 CAGTATACCCAGGTATTCTTTCTGATGTCCAGGAGGAGAAAGGCATTGAGTACAAATTTG 181578 Query 2666 AGATATATGaaaaaaa 2681 | |||||| ||| || Sbjct 181579 AAGTATATGCAAAGAA 181594 >seq74 Length=5275227 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | ||||| || ||||||||| | ||||| || ||||||||| Sbjct 4524617 GTGGTGGAGGAGCTCTTCAGGGATGGAGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 4524676 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| ||| || | |||| || |||||| Sbjct 4524677 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGAGAGATGTCGCCCCTGGTGGACAAC 4524736 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 4524737 ATCGCCCTGTGGATGACTGA 4524756 >seq688 Length=229267 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||| |||||| ||| ||| || | ||| ||||| || | |||||| Sbjct 106864 AGCTGCATTTTCAGCAGCTCAACATGACTCAGGTAAATATGTGCATCTCCCAAAGTATGT 106805 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 ||||| ||| || | || ||||| | ||| | ||| |||| || | || ||| Sbjct 106804 ATGAAGTCATTGGGCTTCAGGCCTGTGATGTGTACCATCCTGTAGGTGAGCAGGGCATAG 106745 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 |||| ||| | | || ||| |||| ||||||||| |||| ||| |||||| || || Sbjct 106744 CTGGTGACACTGGAGGGCACAACCAGGCCCATGTCTCCTGAGCTCCGGTACAGCTGACAG 106685 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || ||||| || ||| | | || ||||| Sbjct 106684 GACAGCTCACCATTTTCCAGGTAGAACTG 106656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414404145196012