Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq460 89.7 4e-13 seq649 82.4 7e-11 >seq460 Length=4635380 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || ||||| || || | || || | | ||| || ||||||||||||||| | Sbjct 1644208 CTCTTTCTGGATATTGTAGTCTGAGAGAGTGTGGTTGTCCTCCAGCTGTTTGCCCGCACA 1644267 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||| ||||||| || | || ||| ||||| |||||| ||||| | | Sbjct 1644268 -ATCAGACGCCGCTGGTCAAGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACCTT 1644326 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | ||| ||||| | | ||| ||||| | ||||| | || ||| || ||| || || Sbjct 1644327 CTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--CGTCTTCAC 1644384 Query 39273 AAAGATTTGCATC 39285 ||| || |||||| Sbjct 1644385 AAATATCTGCATC 1644397 >seq649 Length=3559941 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || ||||| | ||| || || | || || ||||| ||||| ||||| Sbjct 3263943 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 3263884 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | ||||||||| | ||| | || ||| || ||| ||| || || | | Sbjct 3263883 GATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 3263824 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || || | |||||| |||| ||||| | || || || || || || || Sbjct 3263823 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTCAC 3263764 Query 39273 AAAGATTTGCATCTTTAC 39290 ||||||||||| || || Sbjct 3263763 GAAGATTTGCATTTTGAC 3263746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429470303743679