Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq110 163 2e-35 seq307 89.7 4e-13 seq287 87.8 1e-12 >seq110 Length=1713729 Score = 163 bits (180), Expect = 2e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| ||||| Sbjct 1660658 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGT 1660717 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||||| |||||||| || || || |||| | Sbjct 1660718 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGTTCACCGTTCACC 1660777 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | |||||||||||||| |||||||| ||| Sbjct 1660778 ACGTAGAACTGGCAAAGAGCATGGCACGGAGGCAGGGCCATCAGA 1660822 >seq307 Length=5409467 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 114293 CTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAAC 114352 || ||||| |||| || | ||||| | | |||| ||||| | ||| || |||||| Sbjct 1578207 CTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTTGGTTCTTCTTGGGAATAGAGAAC 1578148 Query 114353 CAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCGGTC 114412 || ||||| |||||||| ||||||| ||||| |||||| | || || || | |||| Sbjct 1578147 CATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGATGAGGTTGTGGTC 1578088 Query 114413 AAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGGATGCCACGGCAGATCTCCG 114472 | | | || | || || || || | || ||| |||| ||||| || || Sbjct 1578087 ATTCTTTGGAAATACTTTAATTCATTCCTGAG------CGGCGGCCAGGGCAGGTCCCCA 1578034 Query 114473 TTGTTCCCGATGCCCATG-TCT-GGACACGCTGCCACGATACCGTTCAG 114519 || || |||||||||||| ||| ||||||| || || |||| ||| || Sbjct 1578033 TTCTTGCCGATGCCCATGTTCTGGGACACG--GCGACAATACAGTTTAG 1577987 >seq287 Length=2234162 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 263400 TTGAGGTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCCGGA 263341 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || |||||||| |||||||||||||| ||||||| ||||| |||||| Sbjct 263340 ATAGAGAACCATGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 263293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406092002510338