Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq117 127 3e-24 seq1096 120 4e-22 seq859 116 5e-21 seq596 87.8 2e-12 >seq117 Length=2247267 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | ||| Sbjct 1676624 TGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATAGAC 1676683 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 1676684 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 1676743 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 1676744 TTTCTTATACCAT 1676756 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| ||||| Sbjct 1698457 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 1698516 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || |||||| || || | ||| | ||||||| Sbjct 1698517 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 1698576 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 1698577 ATATGCTGTGGTCTTTCAGCC 1698597 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || |||| || | ||| Sbjct 1686222 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACGCTGT 1686281 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| |||||||| | ||| || ||||||| || Sbjct 1686282 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 1686341 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || ||||| || || | | |||||||| Sbjct 1686342 TCCAGATAAATAGCAAATGCCCCAGGTCG 1686370 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| || Sbjct 1685525 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 1685584 Query 77975 CATCAATGACCAGTC 77989 |||||| |||||||| Sbjct 1685585 CATCAAAGACCAGTC 1685599 >seq1096 Length=651278 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 434578 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 434519 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | ||||||||| ||||||||||| || ||||| || || ||||| || Sbjct 434518 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGC 434460 Score = 104 bits (114), Expect = 3e-17 Identities = 106/138 (77%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| | Sbjct 436091 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 436032 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| |||||||||| ||| ||||| || Sbjct 436031 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGTGAAATATTCTC 435972 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 435971 CATAAAGTCAAATGGATT 435954 >seq859 Length=171326 Score = 116 bits (128), Expect = 5e-21 Identities = 218/314 (69%), Gaps = 15/314 (5%) Strand=Plus/Plus Query 45904 CTTTCAGTACCATCTAGAGATTGCACTTCCTTCAGATCAGGATAATATATACGTTGATAG 45963 |||||||| |||| | | || ||||||| | || |||| | | || |||| | | Sbjct 16832 CTTTCAGTGTCATCCAAAACCTGAACTTCCTCTATTTCTGGATCAAAAATCCGTTCACAA 16891 Query 45964 ATTAGTTGAGCTATTCTATCACCCGTATTTATTTCAAATATATCTTTTCCATTATTGATC 46023 || || || || |||| ||||||| | |||| ||| || | ||||| ||| ||| | Sbjct 16892 ATGAGCTGTGCAATTCGATCACCCTTTTTTACTTCTAACTTTTCTTTGCCAGAATTAAAT 16951 Query 46024 AGAATGACTCCAATTGTCCCTCTATAATCTTCATCTATTACTCCCCCTCCCACATCGAT- 46082 || | || || | | | |||||||||||||||||| ||||||||||| ||||| || Sbjct 16952 AGTACAACACCCACATTTCGTCTATAATCTTCATCTATGACTCCCCCTCCTACATCTATG 17011 Query 46083 -ACCTTTTAG-AGACAGTCCAGATCTAGGAGCTATTCTTCCATAA----CAGAATTTGGG 46136 | ||| | || ||| ||||| | ||||||| ||||||| || ||||| || Sbjct 17012 AAGTGTTTCGCAGCCAGGCCAGAACGGGGAGCTACTCTTCCACAACACCCAGAA----GG 17067 Query 46137 CATAGACATCCGAATATCTGTTTTAATCAATCTCCTTTCTCC--AGGAGGGATAGTATAG 46194 | || ||| |||| ||| |||| | ||| |||| ||| ||| || | ||||| Sbjct 17068 AAGAGCTATCTGAATGTCTATTTTCA-CAA-GGGCTTTTTCCATAGGTGGTACTGTATAA 17125 Query 46195 TCGTACGCACTGTA 46208 || || |||||||| Sbjct 17126 TCATAGGCACTGTA 17139 >seq596 Length=5634117 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || ||||||| ||| ||||||||||| ||||| || ||| Sbjct 2844345 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 2844286 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 ||| |||||||| || || ||||||| Sbjct 2844285 GTACTGGATTGGAAAGATGACAAATC 2844260 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 |||||| || | || |||||||| || ||||| ||||| |||||||| || || ||||| Sbjct 2867468 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTC 2867409 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAA 47943 |||||||||||| ||||| |||| | | ||| Sbjct 2867408 CATAAAATCAAAGGGATTTTCTGCCTGAAAAA 2867377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694543907233120