Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq143 174 2e-38 >seq143 Length=1398753 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| |||| ||| |||||||||||| || ||||| || ||||| ||||| Sbjct 1310992 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 1311051 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || |||||||||||||| || ||||| ||||| ||||| Sbjct 1311052 CTGTTGTGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 1311111 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| || ||| || || | || || |||||||| | Sbjct 1311112 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGTGGGTAGATCATCTCG 1311171 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| ||||||| || || || || |||| Sbjct 1311172 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCCCCATCGATTATCT 1311220 Score = 134 bits (148), Expect = 2e-26 Identities = 212/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| || | || ||||| ||||| ||||| | |||| ||||||||||| | Sbjct 1309241 GAACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATCG 1309300 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || ||||| ||||||||||| Sbjct 1309301 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGT 1309360 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || || || || |||| || ||||| | |||||| || || |||| || | Sbjct 1309361 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATTTCTA 1309420 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| ||||||| |||||||| | || || |||||||| |||| | | | |||| Sbjct 1309421 CCATGGTCTCACCAAAGATGGCATCAGGGCGAGGCTTTTCTACCAGAAGGGCAGGATACA 1309480 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | || || ||||| || | | ||||| || ||||| |||| Sbjct 1309481 GCTCCATGGCATCAATATCACCATAAAGTGCTTCTAACCCCGCAGCCATTTCCTTCTCTC 1309540 Query 8583 CTGT 8586 |||| Sbjct 1309541 CTGT 1309544 Score = 129 bits (142), Expect = 8e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 1312289 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 1312348 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| |||||| ||||||| |||||||| | || ||||| ||||| || Sbjct 1312349 AAATTGATGGGTGAAGTGTTGGGCAAAAAATGCAAACATCATATTTGTGCCTTGGGGGTC 1312408 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 ||| |||| | || | |||||| ||||||||||| | | | ||| || |||| Sbjct 1312409 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 1312468 Query 9829 TGTTTTACCTG 9839 | | || |||| Sbjct 1312469 TTTCTTGCCTG 1312479 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | || || || || ||| || | Sbjct 1312943 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 1313002 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 ||||||||||||||||| || |||||||||||| || | |||||| | ||||| | Sbjct 1313003 TAATAGGAGAGATTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACATTGTAAGTT 1313062 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || ||||| || ||||||| || || |||| Sbjct 1313063 GGTGGGCTCTCGATCAAATGTGACCTGGCTGA 1313094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716747914512320