Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13]
14,383 sequences; 2,372,553,907 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq143 174 2e-38
>seq143
Length=1398753
Score = 174 bits (192), Expect = 2e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| |||| ||| |||||||||||| || ||||| || ||||| |||||
Sbjct 1310992 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 1311051
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||||||||||| ||||| || |||||||||||||| || ||||| ||||| |||||
Sbjct 1311052 CTGTTGTGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 1311111
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | |||| || ||| || || | || || |||||||| |
Sbjct 1311112 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGTGGGTAGATCATCTCG 1311171
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
||||| |||||||| | ||| ||||||| || || || || ||||
Sbjct 1311172 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCCCCATCGATTATCT 1311220
Score = 134 bits (148), Expect = 2e-26
Identities = 212/304 (70%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | ||| || | || ||||| ||||| ||||| | |||| ||||||||||| |
Sbjct 1309241 GAACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATCG 1309300
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402
|| | |||| ||| || || || ||||| || || ||||| |||||||||||
Sbjct 1309301 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGT 1309360
Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462
| || || || || || |||| || ||||| | |||||| || || |||| || |
Sbjct 1309361 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATTTCTA 1309420
Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522
||| ||||||| |||||||| | || || |||||||| |||| | | | ||||
Sbjct 1309421 CCATGGTCTCACCAAAGATGGCATCAGGGCGAGGCTTTTCTACCAGAAGGGCAGGATACA 1309480
Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582
|||||| || || | || || ||||| || | | ||||| || ||||| ||||
Sbjct 1309481 GCTCCATGGCATCAATATCACCATAAAGTGCTTCTAACCCCGCAGCCATTTCCTTCTCTC 1309540
Query 8583 CTGT 8586
||||
Sbjct 1309541 CTGT 1309544
Score = 129 bits (142), Expect = 8e-25
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 1312289 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 1312348
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
||| || || ||||| |||||| ||||||| |||||||| | || ||||| ||||| ||
Sbjct 1312349 AAATTGATGGGTGAAGTGTTGGGCAAAAAATGCAAACATCATATTTGTGCCTTGGGGGTC 1312408
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
||| |||| | || | |||||| ||||||||||| | | | ||| || ||||
Sbjct 1312409 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 1312468
Query 9829 TGTTTTACCTG 9839
| | || ||||
Sbjct 1312469 TTTCTTGCCTG 1312479
Score = 86.0 bits (94), Expect = 9e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | || ||||| || || | || || || || ||| || |
Sbjct 1312943 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 1313002
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
||||||||||||||||| || |||||||||||| || | |||||| | ||||| |
Sbjct 1313003 TAATAGGAGAGATTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACATTGTAAGTT 1313062
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| ||||| || ||||||| || || ||||
Sbjct 1313063 GGTGGGCTCTCGATCAAATGTGACCTGGCTGA 1313094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716747914512320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |