Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq19 352 2e-92 seq341 295 5e-75 seq94 194 1e-44 seq130 129 4e-25 seq592 82.4 6e-11 >seq19 Length=4614554 Score = 352 bits (390), Expect = 2e-92 Identities = 406/545 (74%), Gaps = 11/545 (2%) Strand=Plus/Minus Query 3978 CTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAAC 4037 ||||||||||||| |||||||||||||||| | || ||| || || |||| ||||||||| Sbjct 184316 CTTCTCATATACTCCAAATTTGTACTTAATGCCTTCCTCCTCCTGAACATCAGAAAGAAC 184257 Query 4038 ACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA-AAAAAGGTGT 4096 || | | |||||| |||||||| | ||||| |||||| ||||| |||| Sbjct 184256 ACACAGG---------AGAAGTTTTTATTTCTCCAAATCAATTTCTGGGGAAAAAAGTGT 184206 Query 4097 CACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCA 4156 ||| |||||| || |||| ||||| |||||||| ||| |||| | | ||| | ||| Sbjct 184205 CACTTTCAAATTCCTGCACAATCCTTGTCACAAATAGTCTAAGGTGGTCTGGCTTCTTCA 184146 Query 4157 TAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTA 4216 ||||| | ||| |||||||| ||||| | |||||| |||||||| ||||| ||||||| Sbjct 184145 GGGCTTCCTCATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTGTTTGCTA 184086 Query 4217 ATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTC 4276 ||||||| || || || |||||| |||||| | | ||| || || | |||||||||| Sbjct 184085 ATTCTGGTTGCTCAAAAACTTTTAAGGCATCACCCAGACTTTTGGCAAGAAAATGAGCTT 184026 Query 4277 TATGTGGAAGCTCCTTTAGTTC-CTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGC 4335 |||||| | ||||| || || || ||| || || ||||| | | ||||||| Sbjct 184025 CTTGTGGAGGTTCCTTGAGGTCTCTAACTGGACACTCAATCAATTCCGTCCTTTAAAGAT 183966 Query 4336 CGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTA 4395 || |||||||| ||||| |||||||| |||| ||||||||||||| |||||||||||| Sbjct 183965 CGATTCTTCTCGGGAATAGAGAACCATATCTTCCTACCCATAATCACCAAATTCTGTTTA 183906 Query 4396 TCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTCTT 4455 || ||| || || | || |||||||||||||||| || || ||||| | | Sbjct 183905 CCTTCTACCGAGGAGGATGTGGTCATTCTTTGGAAATACTTGAATTCATTTCTGAACAAG 183846 Query 4456 GGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAATGCAG 4515 ||||| ||| || || | |||| |||||| |||| || | ||||| | |||||| Sbjct 183845 GGCCACAGCAGGTCCCCGTTCTTGCTGATGCCCCTGTTCTGGGACACAGCGAGGATGCAG 183786 Query 4516 TTTAG 4520 ||||| Sbjct 183785 TTTAG 183781 >seq341 Length=1645601 Score = 295 bits (326), Expect = 5e-75 Identities = 338/451 (75%), Gaps = 15/451 (3%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||| | |||||||||| |||| |||||| ||| | | Sbjct 1120567 AAAACACTTTCACATTAATCATTCTTTTTATATACTTCAGATTTCTACTTACTACCTCTT 1120626 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || ||||| ||| |||||||||||||||||||||| | ||| || ||||| | | | Sbjct 1120627 TCCTCTTGGACACCAGAAAGAACACTTGGATATTCTGGAAGAAGCTTATATTTTCCCAAA 1120686 Query 4075 TCAAATT-------CTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCAC 4127 ||| || |||||||||| |||| || |||||| || ||||||||||| ||||| Sbjct 1120687 TCAGTTTCTGGAAACTGGAAAAAATGTGTTACTTTCAAATTC-TGCATGATCCTTGTCAC 1120745 Query 4128 AAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAAT 4187 ||| ||||| |||| || ||| | || | ||||| ||||| ||| |||| ||||| | Sbjct 1120746 AAATAGTTTGAGATGGCTTGGCTTTTTCGTGGCTTCCTTATAAACAAAACTGCCTCCCAC 1120805 Query 4188 TATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATC 4247 |||||| ||| |||| ||||| |||| |||||||| ||| | |||||||| ||| | Sbjct 1120806 TATCCAAACCTTGTCCACTTTCTTTGTTAATTCTG---GTTTAATCAGTTTTAAGGCACC 1120862 Query 4248 ATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAG 4307 ||| | ||| || | || |||||||||| || || | ||||| ||||| || || Sbjct 1120863 ATCCAGACTTTTGGTTAGGAAATGAGCTCCTTGCAGAGGTTCCTTGAGTTC---TCTAAG 1120919 Query 4308 AACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTT 4367 ||| | |||||||||| | |||||||| || ||||||| ||| ||||| || ||||| Sbjct 1120920 AACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTAGGGAGGAGAGAATCATGTCTT 1120979 Query 4368 TTTACCCATAATCACTAAATTCTGTTTATCT 4398 || ||||||||| ||| ||| |||| || Sbjct 1120980 CCTATGCATAATCAC-AAAATCTATTTACCT 1121009 >seq94 Length=2897897 Score = 194 bits (214), Expect = 1e-44 Identities = 188/242 (78%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| ||| | |||| | | |||||||| || ||||| |||||||| || | ||| ||| Sbjct 331125 AGCTCTTAAGCCACATGGCGCACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 331184 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || | |||||| | ||| | | | |||| || || ||| Sbjct 331185 ATCTTCTCCAGCCGGAAGGAGTGGGGGCAGTGCTGAGACTCCCTTCGCAGAACCAGGATC 331244 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| |||||||||||||||| |||| |||| |||||| | ||||| Sbjct 331245 TCTTGCTGGATGGGGACGGAGTTCATGTGGTAGTTTACAGTCCCTTCAGCACTGACACAG 331304 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || |||| ||| |||||||| ||||| || |||||||| ||||| || | || |||||| Sbjct 331305 CCCAAGTGGCGGCACTTTGCCTCCCAGATGACAGAGGGGTATCTCTCAGGGTCCTCATTG 331364 Query 27171 CG 27172 || Sbjct 331365 CG 331366 >seq130 Length=2549235 Score = 129 bits (142), Expect = 4e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| || ||||| |||||||||||||||||||| Sbjct 1163432 TTATAAACAGAACTGCCTCCCACTATCCAAACTATGTCCACTTTATTTGCTAATTCTGGT 1163491 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||||||||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 1163492 TGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 1163551 Query 4285 AGCTCC 4290 | ||| Sbjct 1163552 GGTTCC 1163557 Score = 122 bits (134), Expect = 6e-23 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 1168686 CTTGAGGTCTCTGCTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 1168745 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 ||| |||||||| ||||| ||||||||||||| ||||||||||| Sbjct 1168746 AATAGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTT 1168790 Score = 113 bits (124), Expect = 3e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104 || ||| || |||||||||||| || | ||||| |||||||||||| ||||||| |||| Sbjct 1160479 TACTCTGGCAGAAGTTTGTATTTGTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCA 1160538 Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164 || || ||||| ||||| |||||||| ||| |||||| || ||| | |||| ||||| Sbjct 1160539 AATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTGGTTTGTTCATGGCTTCC 1160598 Query 4165 TT 4166 || Sbjct 1160599 TT 1160600 Score = 95.1 bits (104), Expect = 9e-15 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||||||||||||||||||||||||||||| | |||||| || || |||| Sbjct 1153762 ATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 1153821 Query 4028 TAGAAAGAACACTTGGATAT 4047 |||| |||||| ||| ||| Sbjct 1153822 CAGAAGGAACACCTGGGTAT 1153841 >seq592 Length=1169299 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| ||||| || || || | ||| |||| Sbjct 488141 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTT 488200 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| | || || || | || || || || ||| ||||| || ||||| | Sbjct 488201 CTTCTCTGCTGCAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCGTCCCAGA 488260 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 488261 TTTTCACTCC 488270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360892521247217