Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq19 352 2e-92
seq341 295 5e-75
seq94 194 1e-44
seq130 129 4e-25
seq592 82.4 6e-11
>seq19
Length=4614554
Score = 352 bits (390), Expect = 2e-92
Identities = 406/545 (74%), Gaps = 11/545 (2%)
Strand=Plus/Minus
Query 3978 CTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAAC 4037
||||||||||||| |||||||||||||||| | || ||| || || |||| |||||||||
Sbjct 184316 CTTCTCATATACTCCAAATTTGTACTTAATGCCTTCCTCCTCCTGAACATCAGAAAGAAC 184257
Query 4038 ACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA-AAAAAGGTGT 4096
|| | | |||||| |||||||| | ||||| |||||| ||||| ||||
Sbjct 184256 ACACAGG---------AGAAGTTTTTATTTCTCCAAATCAATTTCTGGGGAAAAAAGTGT 184206
Query 4097 CACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCA 4156
||| |||||| || |||| ||||| |||||||| ||| |||| | | ||| | |||
Sbjct 184205 CACTTTCAAATTCCTGCACAATCCTTGTCACAAATAGTCTAAGGTGGTCTGGCTTCTTCA 184146
Query 4157 TAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTA 4216
||||| | ||| |||||||| ||||| | |||||| |||||||| ||||| |||||||
Sbjct 184145 GGGCTTCCTCATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTGTTTGCTA 184086
Query 4217 ATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTC 4276
||||||| || || || |||||| |||||| | | ||| || || | ||||||||||
Sbjct 184085 ATTCTGGTTGCTCAAAAACTTTTAAGGCATCACCCAGACTTTTGGCAAGAAAATGAGCTT 184026
Query 4277 TATGTGGAAGCTCCTTTAGTTC-CTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGC 4335
|||||| | ||||| || || || ||| || || ||||| | | |||||||
Sbjct 184025 CTTGTGGAGGTTCCTTGAGGTCTCTAACTGGACACTCAATCAATTCCGTCCTTTAAAGAT 183966
Query 4336 CGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTA 4395
|| |||||||| ||||| |||||||| |||| ||||||||||||| ||||||||||||
Sbjct 183965 CGATTCTTCTCGGGAATAGAGAACCATATCTTCCTACCCATAATCACCAAATTCTGTTTA 183906
Query 4396 TCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTCTT 4455
|| ||| || || | || |||||||||||||||| || || ||||| | |
Sbjct 183905 CCTTCTACCGAGGAGGATGTGGTCATTCTTTGGAAATACTTGAATTCATTTCTGAACAAG 183846
Query 4456 GGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAATGCAG 4515
||||| ||| || || | |||| |||||| |||| || | ||||| | ||||||
Sbjct 183845 GGCCACAGCAGGTCCCCGTTCTTGCTGATGCCCCTGTTCTGGGACACAGCGAGGATGCAG 183786
Query 4516 TTTAG 4520
|||||
Sbjct 183785 TTTAG 183781
>seq341
Length=1645601
Score = 295 bits (326), Expect = 5e-75
Identities = 338/451 (75%), Gaps = 15/451 (3%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || || |||||| |||||| | |||||||||| |||| |||||| ||| | |
Sbjct 1120567 AAAACACTTTCACATTAATCATTCTTTTTATATACTTCAGATTTCTACTTACTACCTCTT 1120626
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
|| ||||| ||| |||||||||||||||||||||| | ||| || ||||| | | |
Sbjct 1120627 TCCTCTTGGACACCAGAAAGAACACTTGGATATTCTGGAAGAAGCTTATATTTTCCCAAA 1120686
Query 4075 TCAAATT-------CTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCAC 4127
||| || |||||||||| |||| || |||||| || ||||||||||| |||||
Sbjct 1120687 TCAGTTTCTGGAAACTGGAAAAAATGTGTTACTTTCAAATTC-TGCATGATCCTTGTCAC 1120745
Query 4128 AAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAAT 4187
||| ||||| |||| || ||| | || | ||||| ||||| ||| |||| ||||| |
Sbjct 1120746 AAATAGTTTGAGATGGCTTGGCTTTTTCGTGGCTTCCTTATAAACAAAACTGCCTCCCAC 1120805
Query 4188 TATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATC 4247
|||||| ||| |||| ||||| |||| |||||||| ||| | |||||||| ||| |
Sbjct 1120806 TATCCAAACCTTGTCCACTTTCTTTGTTAATTCTG---GTTTAATCAGTTTTAAGGCACC 1120862
Query 4248 ATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAG 4307
||| | ||| || | || |||||||||| || || | ||||| ||||| || ||
Sbjct 1120863 ATCCAGACTTTTGGTTAGGAAATGAGCTCCTTGCAGAGGTTCCTTGAGTTC---TCTAAG 1120919
Query 4308 AACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTT 4367
||| | |||||||||| | |||||||| || ||||||| ||| ||||| || |||||
Sbjct 1120920 AACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTAGGGAGGAGAGAATCATGTCTT 1120979
Query 4368 TTTACCCATAATCACTAAATTCTGTTTATCT 4398
|| ||||||||| ||| ||| |||| ||
Sbjct 1120980 CCTATGCATAATCAC-AAAATCTATTTACCT 1121009
>seq94
Length=2897897
Score = 194 bits (214), Expect = 1e-44
Identities = 188/242 (78%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990
|||| ||| | |||| | | |||||||| || ||||| |||||||| || | ||| |||
Sbjct 331125 AGCTCTTAAGCCACATGGCGCACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 331184
Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050
|||||||| |||| || || | |||||| | ||| | | | |||| || || |||
Sbjct 331185 ATCTTCTCCAGCCGGAAGGAGTGGGGGCAGTGCTGAGACTCCCTTCGCAGAACCAGGATC 331244
Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110
||||| ||||| ||||| |||||||||||||||| |||| |||| |||||| | |||||
Sbjct 331245 TCTTGCTGGATGGGGACGGAGTTCATGTGGTAGTTTACAGTCCCTTCAGCACTGACACAG 331304
Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170
|| |||| ||| |||||||| ||||| || |||||||| ||||| || | || ||||||
Sbjct 331305 CCCAAGTGGCGGCACTTTGCCTCCCAGATGACAGAGGGGTATCTCTCAGGGTCCTCATTG 331364
Query 27171 CG 27172
||
Sbjct 331365 CG 331366
>seq130
Length=2549235
Score = 129 bits (142), Expect = 4e-25
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | |||||| || ||||| ||||||||||||||||||||
Sbjct 1163432 TTATAAACAGAACTGCCTCCCACTATCCAAACTATGTCCACTTTATTTGCTAATTCTGGT 1163491
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
|| || |||||||||| |||||||| | ||| || || | ||||||||||| ||||||
Sbjct 1163492 TGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 1163551
Query 4285 AGCTCC 4290
| |||
Sbjct 1163552 GGTTCC 1163557
Score = 122 bits (134), Expect = 6e-23
Identities = 90/105 (86%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || || |||||||||| | |||||||||| | |||||||| || |||||||||||
Sbjct 1168686 CTTGAGGTCTCTGCTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 1168745
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394
||| |||||||| ||||| ||||||||||||| |||||||||||
Sbjct 1168746 AATAGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTT 1168790
Score = 113 bits (124), Expect = 3e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104
|| ||| || |||||||||||| || | ||||| |||||||||||| ||||||| ||||
Sbjct 1160479 TACTCTGGCAGAAGTTTGTATTTGTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCA 1160538
Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164
|| || ||||| ||||| |||||||| ||| |||||| || ||| | |||| |||||
Sbjct 1160539 AATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTGGTTTGTTCATGGCTTCC 1160598
Query 4165 TT 4166
||
Sbjct 1160599 TT 1160600
Score = 95.1 bits (104), Expect = 9e-15
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| |||||||||||||||||||||||||||||||| | |||||| || || ||||
Sbjct 1153762 ATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 1153821
Query 4028 TAGAAAGAACACTTGGATAT 4047
|||| |||||| ||| |||
Sbjct 1153822 CAGAAGGAACACCTGGGTAT 1153841
>seq592
Length=1169299
Score = 82.4 bits (90), Expect = 6e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| |||||||| || ||||||||||||||||| ||||| || || || | ||| ||||
Sbjct 488141 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTT 488200
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| |||||| | || || || | || || || || ||| ||||| || ||||| |
Sbjct 488201 CTTCTCTGCTGCAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCGTCCCAGA 488260
Query 102153 TGTGCACGCC 102162
| | ||| ||
Sbjct 488261 TTTTCACTCC 488270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360892521247217
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |