Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq497 138 1e-27
seq3057 125 8e-24
seq590 107 2e-18
seq3107 84.2 3e-11
>seq497
Length=1337528
Score = 138 bits (152), Expect = 1e-27
Identities = 112/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| ||||| | ||| |||||||||||||| || ||||| |||||||| || |
Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| ||||| || ||||| || ||||||||||| |||||||| || || |||||||
Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708
Query 24277 CAATAAGTCTTTCTCC 24292
| | || ||||||||
Sbjct 317707 CCACAACCCTTTCTCC 317692
>seq3057
Length=47849
Score = 125 bits (138), Expect = 8e-24
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| |
Sbjct 11468 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATG 11409
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 11408 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 11349
Query 53270 CTATTTCTAAGACCGTA 53286
|| ||||| | ||| ||
Sbjct 11348 CTGTTTCTTATACCATA 11332
Score = 100 bits (110), Expect = 3e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 2652 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACG 2593
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 2592 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 2533
Query 54145 CGGTTCCAAGTATAT 54159
|| |||| ||| ||
Sbjct 2532 AGGCTCCAGGTAAAT 2518
>seq590
Length=1172511
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218
|| ||||| || || | ||| ||||||||||||||||| ||||| || || | || ||
Sbjct 827236 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 827177
Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278
||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| ||
Sbjct 827176 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 827117
Query 24279 ATAAGTCTTTCTCC 24292
| | |||||| ||
Sbjct 827116 ACCACTCTTTCCCC 827103
Score = 89.7 bits (98), Expect = 6e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578
|||||||||||||| ||||| ||||||||||||||||| || |||| || ||||||
Sbjct 812806 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 812747
Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627
||||| || |||| | | || || ||||| | | || ||| || ||||
Sbjct 812746 TATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 812698
>seq3107
Length=44217
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| || | ||| |||||||||||||| | || || || || || || || || || |
Sbjct 40437 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGA 40378
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
||||||| || || || | || || | || || ||| | || || | || ||| || |
Sbjct 40377 TGGCATAGTCAGGGTGCTCAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTA 40318
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 40317 GTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 40272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593116991030160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |