Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq11 322 6e-83 seq592 183 4e-41 seq328 159 4e-34 seq2546 114 2e-20 >seq11 Length=5147107 Score = 322 bits (356), Expect = 6e-83 Identities = 595/864 (69%), Gaps = 23/864 (3%) Strand=Plus/Plus Query 9502 GGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAAC 9561 ||| || |||||||| | | || || | || ||| | ||||| |||| || | | Sbjct 3789143 GGGCTGCTGGGCAATGCCGTGGTAGTTCTGATACTCACGAAATACAAGAAGCTCCAGATT 3789202 Query 9562 CTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTG 9621 | || ||||| || ||| | |||||||| || || |||||||| ||||| || || || Sbjct 3789203 ATGACCAACATCTTCCTGCTCAACTTGGCTATTTCGGACTTGCTCTTTCTATTCACCCTG 3789262 Query 9622 CCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGT 9681 || ||| | ||||| | ||| || | |||| ||| |||||| || | ||||| Sbjct 3789263 GTGTTCTGGGTTCACTACACTGGG-TGGA--ATGAGTGGGTTTTTGGCCCTTTCATGTGT 3789319 Query 9682 AAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTG 9741 || || ||| || | | ||| || |||||||| || |||||| |||||||||| Sbjct 3789320 AAGCTCCTCTCCGGGCTTTATTATGTGGGCTTGTACAGCGAGATCTTTTTCATCATCCTG 3789379 Query 9742 CTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAA 9799 || || ||||||||||| || || | ||| | || || ||| || ||| | | Sbjct 3789380 CTGACTGTAGACAGGTACCTGGCCATCGTCCACGCCGTGTTTGCCCTTCGAGCCC--GGA 3789437 Query 9800 CAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCC 9859 | || || | ||| | | || |||| |||||| ||||||||| | ||| Sbjct 3789438 CTGTCACTTTTGGTGTCATCACGAGTGTCCTCACCTGGGGCCTGGCAGGGCTAGCAGCCC 3789497 Query 9860 TCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGAT--CC 9917 ||||||| ||| |||| ||| |||||| || | | || || || | || Sbjct 3789498 TCCCTGAGTTTATCTTCCATAAGTCCCAAGACGAGG--GCCAACATTTTGTCTGCTTGCC 3789555 Query 9918 TTACTACCCAGAG----ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGA 9973 | |||||| | | | ||||||| || ||| ||| | | | ||| Sbjct 3789556 TCTTTACCCAAAAGACCAAGAAGACAAATG----GAAGCGTTTCCATGCTCTGAGAATGA 3789611 Query 9974 TTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCA 10033 ||| | ||||| | |||||||||| || |||| ||||||||||| || |||||| | Sbjct 3789612 ATATCCTGGGTCTCGCTCTGCCTCTGCTTATCATGGTTGTCTGCTACTCTGGAATTATTA 3789671 Query 10034 GAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCA 10093 || ||| |||| ||||||| ||||| ||||||||||||||| ||||||| ||||||| Sbjct 3789672 AAACGCTGCTGAGATGCCCCAGTAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCA 3789731 Query 10094 TCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCT 10153 ||||||||| || ||| |||| ||||||||||||||| | || ||||| || ||| | | Sbjct 3789732 TCATGGTGGTCTTTTTCATTTTCTGGACACCCTACAACCTGGTCCTCCTTCTCTCTGCTT 3789791 Query 10154 TTCACGCAACCCTTCTTAA--CCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCT 10211 |||| | | | | || | || | ||| ||| ||||| | ||||| |||| | Sbjct 3789792 TTCAAACGATCTTCTTTGAGGCCAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCAT 3789849 Query 10212 GCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTT 10271 || | | ||| | | |||||||| ||||| ||| ||||||| || |||||||| || Sbjct 3789850 GCAGGTGACAGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCGTCATCTACGCCTT 3789909 Query 10272 CGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTA 10331 ||| ||||||| ||| | | || || | |||||| |||| || ||||||||| ||| Sbjct 3789910 CGTCGGGGAGAGGTTCCGGAATCATCTCTGCCACTTTTTCCGCAGGCACGTGGCCACCTA 3789969 Query 10332 CCTCTGCAAGTACATCCCCTTCCT 10355 ||| |||| |||||||||||||| Sbjct 3789970 CCTGAGCAAATACATCCCCTTCCT 3789993 Score = 322 bits (356), Expect = 6e-83 Identities = 595/864 (69%), Gaps = 23/864 (3%) Strand=Plus/Plus Query 176388 GGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAAC 176447 ||| || |||||||| | | || || | || ||| | ||||| |||| || | | Sbjct 3789143 GGGCTGCTGGGCAATGCCGTGGTAGTTCTGATACTCACGAAATACAAGAAGCTCCAGATT 3789202 Query 176448 CTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTG 176507 | || ||||| || ||| | |||||||| || || |||||||| ||||| || || || Sbjct 3789203 ATGACCAACATCTTCCTGCTCAACTTGGCTATTTCGGACTTGCTCTTTCTATTCACCCTG 3789262 Query 176508 CCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGT 176567 || ||| | ||||| | ||| || | |||| ||| |||||| || | ||||| Sbjct 3789263 GTGTTCTGGGTTCACTACACTGGG-TGGA--ATGAGTGGGTTTTTGGCCCTTTCATGTGT 3789319 Query 176568 AAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTG 176627 || || ||| || | | ||| || |||||||| || |||||| |||||||||| Sbjct 3789320 AAGCTCCTCTCCGGGCTTTATTATGTGGGCTTGTACAGCGAGATCTTTTTCATCATCCTG 3789379 Query 176628 CTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAA 176685 || || ||||||||||| || || | ||| | || || ||| || ||| | | Sbjct 3789380 CTGACTGTAGACAGGTACCTGGCCATCGTCCACGCCGTGTTTGCCCTTCGAGCCC--GGA 3789437 Query 176686 CAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCC 176745 | || || | ||| | | || |||| |||||| ||||||||| | ||| Sbjct 3789438 CTGTCACTTTTGGTGTCATCACGAGTGTCCTCACCTGGGGCCTGGCAGGGCTAGCAGCCC 3789497 Query 176746 TCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGAT--CC 176803 ||||||| ||| |||| ||| |||||| || | | || || || | || Sbjct 3789498 TCCCTGAGTTTATCTTCCATAAGTCCCAAGACGAGG--GCCAACATTTTGTCTGCTTGCC 3789555 Query 176804 TTACTACCCAGAG----ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGA 176859 | |||||| | | | ||||||| || ||| ||| | | | ||| Sbjct 3789556 TCTTTACCCAAAAGACCAAGAAGACAAATG----GAAGCGTTTCCATGCTCTGAGAATGA 3789611 Query 176860 TTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCA 176919 ||| | ||||| | |||||||||| || |||| ||||||||||| || |||||| | Sbjct 3789612 ATATCCTGGGTCTCGCTCTGCCTCTGCTTATCATGGTTGTCTGCTACTCTGGAATTATTA 3789671 Query 176920 GAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCA 176979 || ||| |||| ||||||| ||||| ||||||||||||||| ||||||| ||||||| Sbjct 3789672 AAACGCTGCTGAGATGCCCCAGTAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCA 3789731 Query 176980 TCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCT 177039 ||||||||| || ||| |||| ||||||||||||||| | || ||||| || ||| | | Sbjct 3789732 TCATGGTGGTCTTTTTCATTTTCTGGACACCCTACAACCTGGTCCTCCTTCTCTCTGCTT 3789791 Query 177040 TTCACGCAACCCTTCTTAA--CCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCT 177097 |||| | | | | || | || | ||| ||| ||||| | ||||| |||| | Sbjct 3789792 TTCAAACGATCTTCTTTGAGGCCAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCAT 3789849 Query 177098 GCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTT 177157 || | | ||| | | |||||||| ||||| ||| ||||||| || |||||||| || Sbjct 3789850 GCAGGTGACAGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCGTCATCTACGCCTT 3789909 Query 177158 CGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTA 177217 ||| ||||||| ||| | | || || | |||||| |||| || ||||||||| ||| Sbjct 3789910 CGTCGGGGAGAGGTTCCGGAATCATCTCTGCCACTTTTTCCGCAGGCACGTGGCCACCTA 3789969 Query 177218 CCTCTGCAAGTACATCCCCTTCCT 177241 ||| |||| |||||||||||||| Sbjct 3789970 CCTGAGCAAATACATCCCCTTCCT 3789993 >seq592 Length=1169299 Score = 183 bits (202), Expect = 4e-41 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| || | ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 485547 AGGCCGGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 485606 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||||||||| | |||||||||||||||||| ||||| ||| | || Sbjct 485607 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 485666 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| ||| ||||| || || |||||||| Sbjct 485667 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCAT 485707 >seq328 Length=1672696 Score = 159 bits (176), Expect = 4e-34 Identities = 130/157 (83%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||| | |||||||| || || || || ||||||||||||||||||||||| | ||| Sbjct 136983 CAGCGGCGCAGCCTCAGCCGCAGAGTCTTCAGCTTTTCCCCCAGGGAGTTCACGTGCTCC 136924 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | ||||||||| |||||||||||||||||||||| |||||||||| Sbjct 136923 TTGAT---GTCTGGGTCGTGGTTCTCAGCCTGGGGCATCACCTCCTCCAAGTAAAACTGG 136867 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 136866 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 136830 Score = 109 bits (120), Expect = 6e-19 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||| |||||||| | | |||||||||| ||||||||||| ||||||||||||||||| Sbjct 139237 TCAGATTTTCATCCTCATTGTCATGTAGGTTTCTATGTAGTTGATGAAGATGTCAAACTC 139178 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| ||| | || ||||||| Sbjct 139177 ACTCATGGCTTTGTAGACACCTCTCTCTTGGAGCT 139143 Score = 107 bits (118), Expect = 2e-18 Identities = 136/182 (75%), Gaps = 9/182 (5%) Strand=Plus/Minus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| ||||| ||||||| ||||| || | |||||| | ||||||||||||||||| Sbjct 135693 AAAGAAAGTCTTCACCCTGCCAAAGGCAGCTCGGAGCTCTCGCAGCATGTGGGGCAGGCT 135634 Query 138357 GG-TGGGCAATGTAGGGCAGTCGTCCCCAGAC---TCACTGTCATATTTGTTGTCGGCCC 138412 || |||| | || | ||||| |||| ||||| || ||| | | | | ||| | Sbjct 135633 GGCTGGGAAGTG-GGTGCAGTTGTCCTCAGACGGGGCAGTGTGGTGTCGGCT---GGCTC 135578 Query 138413 ACACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGCTAA-TCTG 138471 ||||||||||| || ||||||||||||||| ||| || ||| ||||| || |||| Sbjct 135577 CTACCCCGGCCAGCAGGACCAGGCAACACAGCTGCGCTGGGCTGGGCATGGTGAAGTCTG 135518 Query 138472 CC 138473 || Sbjct 135517 CC 135516 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074 ||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||| || Sbjct 138075 CTTACTAAAGGCGCTCTTCACCTGCTCCACTGCCTTGCTCTTGTTCTCGCAGGGCAGAAA 138016 Query 138075 TC 138076 || Sbjct 138015 TC 138014 >seq2546 Length=117691 Score = 114 bits (126), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 145681 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCC 145740 ||||| |||| ||||| || ||||| | || || || |||| || | ||||| Sbjct 106007 TTCAGCAGCTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACGAAGTTA 106066 Query 145741 CCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGG---AGTAGCTGGCT 145797 | |||| ||| |||||| ||| |||||||||||||| ||||||| | ||||||| Sbjct 106067 GCTGGCTTCAGGGCCGTGATGTGTGCGACCATGTAGGTGAGCAGGGCCTACGAGCTGGC- 106125 Query 145798 ATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGC 145857 | |||| ||||| ||||| |||||||| | | | | ||| ||| ||||||| ||| Sbjct 106126 --GATGAAAGGCACACCCAGGCCCATGTCTCACCA-CTGTGGCACAATGGGCAGGACAGC 106182 Query 145858 TCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCA 145909 | || ||||||||||| ||| ||| |||||||| | |||||||| Sbjct 106183 TTGCCATTTACCACGTAGAACCAGCAAAGGGCATGGCAGGGAGCCAGGGCCA 106234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589475902666680