Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq11 322 6e-83
seq592 183 4e-41
seq328 159 4e-34
seq2546 114 2e-20
>seq11
Length=5147107
Score = 322 bits (356), Expect = 6e-83
Identities = 595/864 (69%), Gaps = 23/864 (3%)
Strand=Plus/Plus
Query 9502 GGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAAC 9561
||| || |||||||| | | || || | || ||| | ||||| |||| || | |
Sbjct 3789143 GGGCTGCTGGGCAATGCCGTGGTAGTTCTGATACTCACGAAATACAAGAAGCTCCAGATT 3789202
Query 9562 CTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTG 9621
| || ||||| || ||| | |||||||| || || |||||||| ||||| || || ||
Sbjct 3789203 ATGACCAACATCTTCCTGCTCAACTTGGCTATTTCGGACTTGCTCTTTCTATTCACCCTG 3789262
Query 9622 CCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGT 9681
|| ||| | ||||| | ||| || | |||| ||| |||||| || | |||||
Sbjct 3789263 GTGTTCTGGGTTCACTACACTGGG-TGGA--ATGAGTGGGTTTTTGGCCCTTTCATGTGT 3789319
Query 9682 AAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTG 9741
|| || ||| || | | ||| || |||||||| || |||||| ||||||||||
Sbjct 3789320 AAGCTCCTCTCCGGGCTTTATTATGTGGGCTTGTACAGCGAGATCTTTTTCATCATCCTG 3789379
Query 9742 CTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAA 9799
|| || ||||||||||| || || | ||| | || || ||| || ||| | |
Sbjct 3789380 CTGACTGTAGACAGGTACCTGGCCATCGTCCACGCCGTGTTTGCCCTTCGAGCCC--GGA 3789437
Query 9800 CAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCC 9859
| || || | ||| | | || |||| |||||| ||||||||| | |||
Sbjct 3789438 CTGTCACTTTTGGTGTCATCACGAGTGTCCTCACCTGGGGCCTGGCAGGGCTAGCAGCCC 3789497
Query 9860 TCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGAT--CC 9917
||||||| ||| |||| ||| |||||| || | | || || || | ||
Sbjct 3789498 TCCCTGAGTTTATCTTCCATAAGTCCCAAGACGAGG--GCCAACATTTTGTCTGCTTGCC 3789555
Query 9918 TTACTACCCAGAG----ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGA 9973
| |||||| | | | ||||||| || ||| ||| | | | |||
Sbjct 3789556 TCTTTACCCAAAAGACCAAGAAGACAAATG----GAAGCGTTTCCATGCTCTGAGAATGA 3789611
Query 9974 TTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCA 10033
||| | ||||| | |||||||||| || |||| ||||||||||| || |||||| |
Sbjct 3789612 ATATCCTGGGTCTCGCTCTGCCTCTGCTTATCATGGTTGTCTGCTACTCTGGAATTATTA 3789671
Query 10034 GAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCA 10093
|| ||| |||| ||||||| ||||| ||||||||||||||| ||||||| |||||||
Sbjct 3789672 AAACGCTGCTGAGATGCCCCAGTAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCA 3789731
Query 10094 TCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCT 10153
||||||||| || ||| |||| ||||||||||||||| | || ||||| || ||| | |
Sbjct 3789732 TCATGGTGGTCTTTTTCATTTTCTGGACACCCTACAACCTGGTCCTCCTTCTCTCTGCTT 3789791
Query 10154 TTCACGCAACCCTTCTTAA--CCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCT 10211
|||| | | | | || | || | ||| ||| ||||| | ||||| |||| |
Sbjct 3789792 TTCAAACGATCTTCTTTGAGGCCAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCAT 3789849
Query 10212 GCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTT 10271
|| | | ||| | | |||||||| ||||| ||| ||||||| || |||||||| ||
Sbjct 3789850 GCAGGTGACAGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCGTCATCTACGCCTT 3789909
Query 10272 CGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTA 10331
||| ||||||| ||| | | || || | |||||| |||| || ||||||||| |||
Sbjct 3789910 CGTCGGGGAGAGGTTCCGGAATCATCTCTGCCACTTTTTCCGCAGGCACGTGGCCACCTA 3789969
Query 10332 CCTCTGCAAGTACATCCCCTTCCT 10355
||| |||| ||||||||||||||
Sbjct 3789970 CCTGAGCAAATACATCCCCTTCCT 3789993
Score = 322 bits (356), Expect = 6e-83
Identities = 595/864 (69%), Gaps = 23/864 (3%)
Strand=Plus/Plus
Query 176388 GGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAAC 176447
||| || |||||||| | | || || | || ||| | ||||| |||| || | |
Sbjct 3789143 GGGCTGCTGGGCAATGCCGTGGTAGTTCTGATACTCACGAAATACAAGAAGCTCCAGATT 3789202
Query 176448 CTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTG 176507
| || ||||| || ||| | |||||||| || || |||||||| ||||| || || ||
Sbjct 3789203 ATGACCAACATCTTCCTGCTCAACTTGGCTATTTCGGACTTGCTCTTTCTATTCACCCTG 3789262
Query 176508 CCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGT 176567
|| ||| | ||||| | ||| || | |||| ||| |||||| || | |||||
Sbjct 3789263 GTGTTCTGGGTTCACTACACTGGG-TGGA--ATGAGTGGGTTTTTGGCCCTTTCATGTGT 3789319
Query 176568 AAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTG 176627
|| || ||| || | | ||| || |||||||| || |||||| ||||||||||
Sbjct 3789320 AAGCTCCTCTCCGGGCTTTATTATGTGGGCTTGTACAGCGAGATCTTTTTCATCATCCTG 3789379
Query 176628 CTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAA 176685
|| || ||||||||||| || || | ||| | || || ||| || ||| | |
Sbjct 3789380 CTGACTGTAGACAGGTACCTGGCCATCGTCCACGCCGTGTTTGCCCTTCGAGCCC--GGA 3789437
Query 176686 CAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCC 176745
| || || | ||| | | || |||| |||||| ||||||||| | |||
Sbjct 3789438 CTGTCACTTTTGGTGTCATCACGAGTGTCCTCACCTGGGGCCTGGCAGGGCTAGCAGCCC 3789497
Query 176746 TCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGAT--CC 176803
||||||| ||| |||| ||| |||||| || | | || || || | ||
Sbjct 3789498 TCCCTGAGTTTATCTTCCATAAGTCCCAAGACGAGG--GCCAACATTTTGTCTGCTTGCC 3789555
Query 176804 TTACTACCCAGAG----ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGA 176859
| |||||| | | | ||||||| || ||| ||| | | | |||
Sbjct 3789556 TCTTTACCCAAAAGACCAAGAAGACAAATG----GAAGCGTTTCCATGCTCTGAGAATGA 3789611
Query 176860 TTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCA 176919
||| | ||||| | |||||||||| || |||| ||||||||||| || |||||| |
Sbjct 3789612 ATATCCTGGGTCTCGCTCTGCCTCTGCTTATCATGGTTGTCTGCTACTCTGGAATTATTA 3789671
Query 176920 GAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCA 176979
|| ||| |||| ||||||| ||||| ||||||||||||||| ||||||| |||||||
Sbjct 3789672 AAACGCTGCTGAGATGCCCCAGTAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCA 3789731
Query 176980 TCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCT 177039
||||||||| || ||| |||| ||||||||||||||| | || ||||| || ||| | |
Sbjct 3789732 TCATGGTGGTCTTTTTCATTTTCTGGACACCCTACAACCTGGTCCTCCTTCTCTCTGCTT 3789791
Query 177040 TTCACGCAACCCTTCTTAA--CCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCT 177097
|||| | | | | || | || | ||| ||| ||||| | ||||| |||| |
Sbjct 3789792 TTCAAACGATCTTCTTTGAGGCCAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCAT 3789849
Query 177098 GCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTT 177157
|| | | ||| | | |||||||| ||||| ||| ||||||| || |||||||| ||
Sbjct 3789850 GCAGGTGACAGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCGTCATCTACGCCTT 3789909
Query 177158 CGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTA 177217
||| ||||||| ||| | | || || | |||||| |||| || ||||||||| |||
Sbjct 3789910 CGTCGGGGAGAGGTTCCGGAATCATCTCTGCCACTTTTTCCGCAGGCACGTGGCCACCTA 3789969
Query 177218 CCTCTGCAAGTACATCCCCTTCCT 177241
||| |||| ||||||||||||||
Sbjct 3789970 CCTGAGCAAATACATCCCCTTCCT 3789993
>seq592
Length=1169299
Score = 183 bits (202), Expect = 4e-41
Identities = 137/161 (85%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
||||| |||| ||| || | ||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 485547 AGGCCGGTGATGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 485606
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| ||||| |||||||||||||| | |||||||||||||||||| ||||| ||| | ||
Sbjct 485607 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 485666
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910
|||||||||||||| ||| ||||| || || ||||||||
Sbjct 485667 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCAT 485707
>seq328
Length=1672696
Score = 159 bits (176), Expect = 4e-34
Identities = 130/157 (83%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
||||| | |||||||| || || || || ||||||||||||||||||||||| | |||
Sbjct 136983 CAGCGGCGCAGCCTCAGCCGCAGAGTCTTCAGCTTTTCCCCCAGGGAGTTCACGTGCTCC 136924
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| ||| | | ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 136923 TTGAT---GTCTGGGTCGTGGTTCTCAGCCTGGGGCATCACCTCCTCCAAGTAAAACTGG 136867
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
|||||||| |||| ||| ||||| |||||||||||||
Sbjct 136866 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 136830
Score = 109 bits (120), Expect = 6e-19
Identities = 81/95 (85%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981
|||| |||||||| | | |||||||||| ||||||||||| |||||||||||||||||
Sbjct 139237 TCAGATTTTCATCCTCATTGTCATGTAGGTTTCTATGTAGTTGATGAAGATGTCAAACTC 139178
Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
|||||||| |||||||| ||| | || |||||||
Sbjct 139177 ACTCATGGCTTTGTAGACACCTCTCTCTTGGAGCT 139143
Score = 107 bits (118), Expect = 2e-18
Identities = 136/182 (75%), Gaps = 9/182 (5%)
Strand=Plus/Minus
Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356
|||||| ||||| ||||||| ||||| || | |||||| | |||||||||||||||||
Sbjct 135693 AAAGAAAGTCTTCACCCTGCCAAAGGCAGCTCGGAGCTCTCGCAGCATGTGGGGCAGGCT 135634
Query 138357 GG-TGGGCAATGTAGGGCAGTCGTCCCCAGAC---TCACTGTCATATTTGTTGTCGGCCC 138412
|| |||| | || | ||||| |||| ||||| || ||| | | | | ||| |
Sbjct 135633 GGCTGGGAAGTG-GGTGCAGTTGTCCTCAGACGGGGCAGTGTGGTGTCGGCT---GGCTC 135578
Query 138413 ACACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGCTAA-TCTG 138471
||||||||||| || ||||||||||||||| ||| || ||| ||||| || ||||
Sbjct 135577 CTACCCCGGCCAGCAGGACCAGGCAACACAGCTGCGCTGGGCTGGGCATGGTGAAGTCTG 135518
Query 138472 CC 138473
||
Sbjct 135517 CC 135516
Score = 89.7 bits (98), Expect = 6e-13
Identities = 57/62 (92%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074
||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 138075 CTTACTAAAGGCGCTCTTCACCTGCTCCACTGCCTTGCTCTTGTTCTCGCAGGGCAGAAA 138016
Query 138075 TC 138076
||
Sbjct 138015 TC 138014
>seq2546
Length=117691
Score = 114 bits (126), Expect = 2e-20
Identities = 166/232 (72%), Gaps = 7/232 (3%)
Strand=Plus/Plus
Query 145681 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCC 145740
||||| |||| ||||| || ||||| | || || || |||| || | |||||
Sbjct 106007 TTCAGCAGCTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACGAAGTTA 106066
Query 145741 CCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGG---AGTAGCTGGCT 145797
| |||| ||| |||||| ||| |||||||||||||| ||||||| | |||||||
Sbjct 106067 GCTGGCTTCAGGGCCGTGATGTGTGCGACCATGTAGGTGAGCAGGGCCTACGAGCTGGC- 106125
Query 145798 ATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGC 145857
| |||| ||||| ||||| |||||||| | | | | ||| ||| ||||||| |||
Sbjct 106126 --GATGAAAGGCACACCCAGGCCCATGTCTCACCA-CTGTGGCACAATGGGCAGGACAGC 106182
Query 145858 TCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCA 145909
| || ||||||||||| ||| ||| |||||||| | ||||||||
Sbjct 106183 TTGCCATTTACCACGTAGAACCAGCAAAGGGCATGGCAGGGAGCCAGGGCCA 106234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589475902666680
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