Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq428 262 5e-65
seq563 214 2e-50
seq1971 192 7e-44
seq884 125 9e-24
seq193 122 1e-22
seq2175 113 5e-20
seq90 109 7e-19
seq1158 91.5 2e-13
>seq428
Length=1462753
Score = 262 bits (290), Expect = 5e-65
Identities = 261/338 (77%), Gaps = 0/338 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||| ||||| | | | ||| | ||||| ||||||||||||||
Sbjct 1132525 AGCAGGGCTTCGATGTCAGGCTCGATATCGATGGTTGGAAAGCGGCGGCTGTACCTGCGC 1132466
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| || || | |||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 1132465 ACAGGCACACCATCCGGACCCACCAGGAACTTCTCAAAGTTCCAGGCGACGTCGTTGCGG 1132406
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| ||||||||| |||| || |||||| ||| ||||| | |||||| ||
Sbjct 1132405 CACACGGGAGACCAGATGATGAACTTTGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTG 1132346
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|| | ||||| ||||| || ||||| |||||||| || || ||| || ||||| |||
Sbjct 1132345 GGGACAGGCAGAGCCTCCCGCAGGAAAGCGAAGAGAGGGTGCGCCTGCGCGCCGTTCACC 1132286
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
||||||||||| || ||| | ||||| |||||||| ||| || || ||||||| |||
Sbjct 1132285 TCGCACTTCTCAAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCGGGTCGGACGTACTTG 1132226
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
|||||| || |||||| | |||| ||||| |||||
Sbjct 1132225 AGGGAATTCAGGATCTCTTCGTTCTTAGCGTTCTCCTG 1132188
Score = 192 bits (212), Expect = 7e-44
Identities = 169/211 (80%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || ||||| ||||| ||||| | || ||||
Sbjct 1132003 CCTGATGCCCAAACTGGTTGCACGGGAAACCGAGCACAACCAGGCCCCGGGGCCCGAGGC 1131944
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| |
Sbjct 1131943 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 1131884
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| ||||| ||||||| ||| |||||| | | | || | ||||| || || || ||||
Sbjct 1131883 CATTCTCTATGAGCAGCACCTTGCCCCGCAGGGAACCCAGGCTCAGGGGCTCCCCGCCGG 1131824
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601
| | |||||| || |||||||| ||||| ||
Sbjct 1131823 TCAGCGGGCGCGCAGAGAAGGCATACACCGA 1131793
>seq563
Length=1217257
Score = 214 bits (236), Expect = 2e-50
Identities = 289/391 (74%), Gaps = 9/391 (2%)
Strand=Plus/Minus
Query 83136 CCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAA 83195
||||| ||||||||| |||||||||| |||| |||||||||||| |||||||||| |
Sbjct 458913 CCACCTGGAACTTCTCTAAGTTCCAGGAGACGTTGTTGCGGCACACGGGAGACCAGGTGA 458854
Query 83196 TGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTC 83255
||| | | ||||| || || || | | |||| || || || |||| | ||||
Sbjct 458853 TGAACCTGAGGTCGGTCCTGACCGCAGTGGCGGCGTCACTTGGAGCAGGCAAAGTCTCT- 458795
Query 83256 GTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCA 83315
| |||||||||||||| || |||||| || ||||| ||||||||||| || || ||||
Sbjct 458794 GCAGGAAGGCGAAGAGGGG-TGTGCCTGCGCGCCGTTCACCTCGCACTTGTCAAAAAGCA 458736
Query 83316 TAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTC-G 83374
| ||| | |||||||| | | || || ||||||| ||| |||| || ||| ||
Sbjct 458735 TCAAGGTGGGCTCGAACCAGCCGCCGGGTCGGACGTACTTGAGGGGTTTCAGGATTTCTT 458676
Query 83375 GCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGC-ACTACCAG 83433
| |||| |||||| ||||| || ||||||||| | |||||| || ||| || |||||
Sbjct 458675 GGTTTCT-GGCGTTCTCCTGATGCAGGAACTGGTTGCTCGGGAATCCGAGCAACGACCAG 458617
Query 83434 -CCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACC-GTG 83491
| | |||| || |||| | || |||||| ||||||||| | | | |||| |||| ||
Sbjct 458616 TCTCTAGAGC-CCGAGGCCCTGCCGCAGCTGGTTCATCTGGGCGGAGTCCCAGACCTATG 458558
Query 83492 CTACCTCAGAGGGACGCTACGTTCTCGATGA 83522
| |||||||| || || | ||||| ||||
Sbjct 458557 C-GCCTCAGAGCGAGGCCGCATTCTCCATGA 458528
>seq1971
Length=274311
Score = 192 bits (212), Expect = 7e-44
Identities = 336/483 (70%), Gaps = 6/483 (1%)
Strand=Plus/Minus
Query 83045 GCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCA-GCGGTG 83103
|||| | ||| |||| ||| |||||||| || ||| | | || |||| | |||| |
Sbjct 258573 GCTGTCCGGGACAGCATGGCTTCGATGTCAGGTTCCGTATCAATGG-CTGGAAAGCGGCG 258515
Query 83104 GCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGC 83163
| ||||||| |||| ||| ||||| | ||||||| || |||||| ||||||||||
Sbjct 258514 TCAGTACCTGGGCACAGGCACACCGTCGGGGCCCACCAGGAGCTTCTCAGAGTTCCAGGC 258455
Query 83164 CACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT 83223
||||||| | ||| ||| |||||||||| |||| || || || ||| ||| | |
Sbjct 258454 GACGTCGTCGAGGCCCACCAGAGACCAGGCGATGAACTTGGAATCAGTCATGAGTGCAGT 258395
Query 83224 CATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT 83283
|| || || | || |||||| ||||| | || ||| |||||| || || |||
Sbjct 258394 GGCGTTCTCACTGCGGGCAGGCAGGACCTCTTGCAGAAAGACGAAGACGGGGTGCGCCTG 258335
Query 83284 TGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGG 83343
|| || || |||| | |||| | || || ||||| |||| || | | | |
Sbjct 258334 CGCGCCATTCACCTTGTACTTA--GGAG-GCGGCAAGTTGGGCTGGAGCCTGCCGCTTAG 258278
Query 83344 ACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAA 83403
|||||||||| |||||| || ||||| ||| |||||||||| |||| || ||
Sbjct 258277 TGGGACGTGCTTGAGGGAATTCAGGATCTTTTAGCTCTTGGCGTTTTCCCGGTGCCCAAA 258218
Query 83404 CTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTC 83463
||||| ||||| | |||| ||| | ||| | | | |||||||||||||||
Sbjct 258217 CTGGTGGTGGGGGAAGCGGAGCATGACCCGGCCCTGGGGCCAGAGGCGCCGCTGCAGCCG 258158
Query 83464 GTTCATCTGAGTGTACTCCCGGA-CCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGA 83522
|||| | || ||||| || |||| || | |||| ||| ||||| || ||||||||||
Sbjct 258157 GTTCTTGTGGGTGTAATCTCGGACCCTTTGGGCCTCGGAGCGACGCCACATTCTCGATGA 258098
Query 83523 GCA 83525
|||
Sbjct 258097 GCA 258095
>seq884
Length=856297
Score = 125 bits (138), Expect = 9e-24
Identities = 298/444 (67%), Gaps = 15/444 (3%)
Strand=Plus/Minus
Query 83101 GTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCA 83160
|||||||||||| |||| |||| ||||| | ||| ||| ||||||| |||||||| |
Sbjct 209181 GTGGCTGTACCTTCGCAAGGGCACACCGTCTGGGCCCTCCAGGAACTTCCCGAAGTTCTA 209122
Query 83161 GGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGT 83220
| | || | |||| |||||| ||||||||| |||||| ||||| | ||||||||
Sbjct 209121 GCCGACCCCTTTGCCGCACACCTGAGACCAGG---TGAGCTTGGGGTGGGCCACGAGCGC 209065
Query 83221 GCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTA--GGAAGGCGAAGAGCGGATGT 83278
| || ||| | || | || || ||||| | | | ||| || ||||| ||
Sbjct 209064 TGTGGCGTGCTCGTTGGGTGTGGGGAGAGCCTCGTGCACGTGCAGGAGA--AGCGGTTGC 209007
Query 83279 GCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTC 83338
|| ||| | | || | ||||| |||| | | || ||||| ||| |||
Sbjct 209006 ACCTGCACACAGCTAGCCAGGGGATTCTCAAAGAACCGGATGTCCGGCTGGAACCCGCCG 208947
Query 83339 CCAGGACGGACGTGCTTCAGGGAAGG---CAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395
| || | |||| ||| | ||| || || |||||| || |||| |||||| |||
Sbjct 208946 CGGGGTCTGACGGTCTTGA-GGAGGGTTTCAGGATCTCCGCCTTCTTGGCGTTCCGCTGA 208888
Query 83396 TGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGC---TCCTAGGCGC 83452
|| | |||||| ||| |||| | ||||| |||| ||| | | || ||||||
Sbjct 208887 TGCAGGTCCTGGTTGCACCGGAAGCTGAGCACGCCCAGGCCCAGCCCGTGGCCGAGGCGC 208828
Query 83453 CGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACG 83512
|||| ||||| ||| ||| |||| || | | | ||| | |||||||| || || ||
Sbjct 208827 TGCTGTGGCTCG-TCACCTGGGTGTCCTGCAGCAGCGTCGTGCCTCAGAGCGAAGCCACC 208769
Query 83513 TTCTCGATGAGCAAGACCCGGCCC 83536
|||||| ||| | ||| ||||
Sbjct 208768 TTCTCGGGGAGGATCACCTTGCCC 208745
>seq193
Length=2192004
Score = 122 bits (134), Expect = 1e-22
Identities = 192/267 (72%), Gaps = 6/267 (2%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| |||
Sbjct 293547 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 293489
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || | || || |||||||| || |||||||||| || ||| | |||||||
Sbjct 293488 TGGTGCACCTCTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAATACAACTGCA 293429
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
|||||| |||||||| |||| || |||||| ||| | | |||| |||||
Sbjct 293428 GCGGCTCTCTGGGCAAGAAGCAG-CTGGACCCGGCGCGCATCAAGCTCATCCGCCACTAC 293370
Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646
|||||| |||| |||| ||| | | ||||| |||||||||| ||||| |||
Sbjct 293369 GTGCAGCTGCTCTACCCCCGCGCCAAG-AACGACCGCGTGTGGACGCTGGAGTTCGTGGG 293311
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673
|||||||||||||||||||||||
Sbjct 293310 CAAGCTGGACGAGCGCTGCCGGCGCCG 293284
>seq2175
Length=212603
Score = 113 bits (124), Expect = 5e-20
Identities = 284/425 (67%), Gaps = 15/425 (4%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| | ||| || ||||| | | |||| | ||| | ||| |||||| |
Sbjct 98162 AGCAGGGCTTTGATATCAGGCTCAATATAAATGGTCGGAAAGCAGCAGCTCTACCTGTTC 98103
Query 83117 ACGGGCGTGCC--GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174
| ||| || || | ||||||| ||||||||| ||||||||||| || | ||||
Sbjct 98102 GCAGGCACACCATGTGGGAGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATTGTTGA 98043
Query 83175 GGCACA--CTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTC 83232
|| ||| ||| ||||| | |||| || ||||| | || |||| | ||| ||
Sbjct 98042 GGAACATCCTG--GACCAAGTGATGAACTCGGGGTTGGTCGTGAGCACAGTGGTGTTTTC 97985
Query 83233 GCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTT 83292
|| || || | ||| ||||| || |||| |||| | || || || ||||| |||
Sbjct 97984 ACTGGGGGCAGACAGAGCCTCCTACAGCAAGGTGAAG-GGGGGTGCACCTGTGCACTGTT 97926
Query 83293 GACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAG------GACG 83346
||||| |||||| | || ||||| ||| | |||| || | | | |
Sbjct 97925 CACCTCACACTTCGC-AAAAGCATGAAGGTTAGCTCCAACTACAACTTGGGTGGTAGTGG 97867
Query 83347 GACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTG 83406
|| |||||| |||||| || |||| |||| ||| || ||||| || | ||||||
Sbjct 97866 GATGTGCTTGAGGGAATTCAGGATCAATTTCTTCTTGGCATTCTCCTGATGCCAGAACTG 97807
Query 83407 GTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTT 83466
||| | ||||| | || ||||| ||| | || || |||| || ||||||||| ||
Sbjct 97806 GTTGCCTGGGAAGCTGAGTTTGACCAGGCCCTGGGC-CCAAGGCACCACTGCAGCTCCTT 97748
Query 83467 CATCT 83471
|||||
Sbjct 97747 CATCT 97743
>seq90
Length=2936694
Score = 109 bits (120), Expect = 7e-19
Identities = 177/255 (69%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||||| | ||||| ||||| ||| ||| | || ||||||||||||||| |
Sbjct 875137 AGCAGGGTTTTAATGTCAGGCTCATTGGCAGTGGTTGGAAAGTGGTGGCTGTACCTGCAC 875196
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|||||| || || | ||||||| | |||||| |||||| |||| | || |||||
Sbjct 875197 ACGGGCAAACCATCTGGGCCCACCAGGTACTTCTTGAAGTTTCAGGTGATGTTGTTGCAT 875256
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||| |||||||||||| | | || ||||| | ||| ||||| | || | ||
Sbjct 875257 CACCCTGGAGACCAGGTGTTAAACTTGGGGTTGGTCAGGAGCGCAGTGGCATCATGACTG 875316
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|| || ||||| | || ||||||||| | | || || ||| |||| || |||
Sbjct 875317 GGGGCAGGCAGAGACTTCTATAGGAAGGCAAGCTGGGGGTGCGCCTGCACACCATTCACC 875376
Query 83297 TCGCACTTCTCGAAG 83311
| ||||||||| |||
Sbjct 875377 TTGCACTTCTCAAAG 875391
>seq1158
Length=656631
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/224 (70%), Gaps = 7/224 (3%)
Strand=Plus/Minus
Query 83111 CTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCG 83170
|||| ||| | ||||| ||| |||||| |||||||| ||||||||||| || | |
Sbjct 100769 CTGCACACAGACGTGCTGTCCAGTGCCACCAGGAACTTCTTGAAGTTCCAGGGGACATTG 100710
Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC---GTGCTCATG 83227
|||| |||| |||||||||||| |||| || | |||| ||| |||| ||| | |||
Sbjct 100709 TTGCAGCACTCTGGAGACCAGGTGATGAACTCGAGGTCAGTCAGGAGCCCAGTGGT-ATG 100651
Query 83228 TCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCA 83287
|| ||| || ||||||| ||| | ||||||| ||||| || | | ||||
Sbjct 100650 --ATCACTA-GCCTCGGCAGGCCCTTCTGCAGGAAGGGGAAGAATGGGTCCATCTGTGCA 100594
Query 83288 CCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAA 83331
|| || ||| | ||||| |||| | | || || || || ||
Sbjct 100593 CCATTTGCCTGGGTGTTCTCAAAGACCCTGAAATTGGGTTCAAA 100550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608176839388680
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