Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq428 262 5e-65 seq563 214 2e-50 seq1971 192 7e-44 seq884 125 9e-24 seq193 122 1e-22 seq2175 113 5e-20 seq90 109 7e-19 seq1158 91.5 2e-13 >seq428 Length=1462753 Score = 262 bits (290), Expect = 5e-65 Identities = 261/338 (77%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | ||| | ||||| |||||||||||||| Sbjct 1132525 AGCAGGGCTTCGATGTCAGGCTCGATATCGATGGTTGGAAAGCGGCGGCTGTACCTGCGC 1132466 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | |||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 1132465 ACAGGCACACCATCCGGACCCACCAGGAACTTCTCAAAGTTCCAGGCGACGTCGTTGCGG 1132406 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| |||| || |||||| ||| ||||| | |||||| || Sbjct 1132405 CACACGGGAGACCAGATGATGAACTTTGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTG 1132346 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||| ||||| || ||||| |||||||| || || ||| || ||||| ||| Sbjct 1132345 GGGACAGGCAGAGCCTCCCGCAGGAAAGCGAAGAGAGGGTGCGCCTGCGCGCCGTTCACC 1132286 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| || ||| | ||||| |||||||| ||| || || ||||||| ||| Sbjct 1132285 TCGCACTTCTCAAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCGGGTCGGACGTACTTG 1132226 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| || |||||| | |||| ||||| ||||| Sbjct 1132225 AGGGAATTCAGGATCTCTTCGTTCTTAGCGTTCTCCTG 1132188 Score = 192 bits (212), Expect = 7e-44 Identities = 169/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 1132003 CCTGATGCCCAAACTGGTTGCACGGGAAACCGAGCACAACCAGGCCCCGGGGCCCGAGGC 1131944 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 1131943 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 1131884 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | | || | ||||| || || || |||| Sbjct 1131883 CATTCTCTATGAGCAGCACCTTGCCCCGCAGGGAACCCAGGCTCAGGGGCTCCCCGCCGG 1131824 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | | |||||| || |||||||| ||||| || Sbjct 1131823 TCAGCGGGCGCGCAGAGAAGGCATACACCGA 1131793 >seq563 Length=1217257 Score = 214 bits (236), Expect = 2e-50 Identities = 289/391 (74%), Gaps = 9/391 (2%) Strand=Plus/Minus Query 83136 CCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAA 83195 ||||| ||||||||| |||||||||| |||| |||||||||||| |||||||||| | Sbjct 458913 CCACCTGGAACTTCTCTAAGTTCCAGGAGACGTTGTTGCGGCACACGGGAGACCAGGTGA 458854 Query 83196 TGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTC 83255 ||| | | ||||| || || || | | |||| || || || |||| | |||| Sbjct 458853 TGAACCTGAGGTCGGTCCTGACCGCAGTGGCGGCGTCACTTGGAGCAGGCAAAGTCTCT- 458795 Query 83256 GTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCA 83315 | |||||||||||||| || |||||| || ||||| ||||||||||| || || |||| Sbjct 458794 GCAGGAAGGCGAAGAGGGG-TGTGCCTGCGCGCCGTTCACCTCGCACTTGTCAAAAAGCA 458736 Query 83316 TAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTC-G 83374 | ||| | |||||||| | | || || ||||||| ||| |||| || ||| || Sbjct 458735 TCAAGGTGGGCTCGAACCAGCCGCCGGGTCGGACGTACTTGAGGGGTTTCAGGATTTCTT 458676 Query 83375 GCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGC-ACTACCAG 83433 | |||| |||||| ||||| || ||||||||| | |||||| || ||| || ||||| Sbjct 458675 GGTTTCT-GGCGTTCTCCTGATGCAGGAACTGGTTGCTCGGGAATCCGAGCAACGACCAG 458617 Query 83434 -CCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACC-GTG 83491 | | |||| || |||| | || |||||| ||||||||| | | | |||| |||| || Sbjct 458616 TCTCTAGAGC-CCGAGGCCCTGCCGCAGCTGGTTCATCTGGGCGGAGTCCCAGACCTATG 458558 Query 83492 CTACCTCAGAGGGACGCTACGTTCTCGATGA 83522 | |||||||| || || | ||||| |||| Sbjct 458557 C-GCCTCAGAGCGAGGCCGCATTCTCCATGA 458528 >seq1971 Length=274311 Score = 192 bits (212), Expect = 7e-44 Identities = 336/483 (70%), Gaps = 6/483 (1%) Strand=Plus/Minus Query 83045 GCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCA-GCGGTG 83103 |||| | ||| |||| ||| |||||||| || ||| | | || |||| | |||| | Sbjct 258573 GCTGTCCGGGACAGCATGGCTTCGATGTCAGGTTCCGTATCAATGG-CTGGAAAGCGGCG 258515 Query 83104 GCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGC 83163 | ||||||| |||| ||| ||||| | ||||||| || |||||| |||||||||| Sbjct 258514 TCAGTACCTGGGCACAGGCACACCGTCGGGGCCCACCAGGAGCTTCTCAGAGTTCCAGGC 258455 Query 83164 CACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT 83223 ||||||| | ||| ||| |||||||||| |||| || || || ||| ||| | | Sbjct 258454 GACGTCGTCGAGGCCCACCAGAGACCAGGCGATGAACTTGGAATCAGTCATGAGTGCAGT 258395 Query 83224 CATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT 83283 || || || | || |||||| ||||| | || ||| |||||| || || ||| Sbjct 258394 GGCGTTCTCACTGCGGGCAGGCAGGACCTCTTGCAGAAAGACGAAGACGGGGTGCGCCTG 258335 Query 83284 TGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGG 83343 || || || |||| | |||| | || || ||||| |||| || | | | | Sbjct 258334 CGCGCCATTCACCTTGTACTTA--GGAG-GCGGCAAGTTGGGCTGGAGCCTGCCGCTTAG 258278 Query 83344 ACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAA 83403 |||||||||| |||||| || ||||| ||| |||||||||| |||| || || Sbjct 258277 TGGGACGTGCTTGAGGGAATTCAGGATCTTTTAGCTCTTGGCGTTTTCCCGGTGCCCAAA 258218 Query 83404 CTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTC 83463 ||||| ||||| | |||| ||| | ||| | | | ||||||||||||||| Sbjct 258217 CTGGTGGTGGGGGAAGCGGAGCATGACCCGGCCCTGGGGCCAGAGGCGCCGCTGCAGCCG 258158 Query 83464 GTTCATCTGAGTGTACTCCCGGA-CCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGA 83522 |||| | || ||||| || |||| || | |||| ||| ||||| || |||||||||| Sbjct 258157 GTTCTTGTGGGTGTAATCTCGGACCCTTTGGGCCTCGGAGCGACGCCACATTCTCGATGA 258098 Query 83523 GCA 83525 ||| Sbjct 258097 GCA 258095 >seq884 Length=856297 Score = 125 bits (138), Expect = 9e-24 Identities = 298/444 (67%), Gaps = 15/444 (3%) Strand=Plus/Minus Query 83101 GTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCA 83160 |||||||||||| |||| |||| ||||| | ||| ||| ||||||| |||||||| | Sbjct 209181 GTGGCTGTACCTTCGCAAGGGCACACCGTCTGGGCCCTCCAGGAACTTCCCGAAGTTCTA 209122 Query 83161 GGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGT 83220 | | || | |||| |||||| ||||||||| |||||| ||||| | |||||||| Sbjct 209121 GCCGACCCCTTTGCCGCACACCTGAGACCAGG---TGAGCTTGGGGTGGGCCACGAGCGC 209065 Query 83221 GCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTA--GGAAGGCGAAGAGCGGATGT 83278 | || ||| | || | || || ||||| | | | ||| || ||||| || Sbjct 209064 TGTGGCGTGCTCGTTGGGTGTGGGGAGAGCCTCGTGCACGTGCAGGAGA--AGCGGTTGC 209007 Query 83279 GCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTC 83338 || ||| | | || | ||||| |||| | | || ||||| ||| ||| Sbjct 209006 ACCTGCACACAGCTAGCCAGGGGATTCTCAAAGAACCGGATGTCCGGCTGGAACCCGCCG 208947 Query 83339 CCAGGACGGACGTGCTTCAGGGAAGG---CAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 | || | |||| ||| | ||| || || |||||| || |||| |||||| ||| Sbjct 208946 CGGGGTCTGACGGTCTTGA-GGAGGGTTTCAGGATCTCCGCCTTCTTGGCGTTCCGCTGA 208888 Query 83396 TGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGC---TCCTAGGCGC 83452 || | |||||| ||| |||| | ||||| |||| ||| | | || |||||| Sbjct 208887 TGCAGGTCCTGGTTGCACCGGAAGCTGAGCACGCCCAGGCCCAGCCCGTGGCCGAGGCGC 208828 Query 83453 CGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACG 83512 |||| ||||| ||| ||| |||| || | | | ||| | |||||||| || || || Sbjct 208827 TGCTGTGGCTCG-TCACCTGGGTGTCCTGCAGCAGCGTCGTGCCTCAGAGCGAAGCCACC 208769 Query 83513 TTCTCGATGAGCAAGACCCGGCCC 83536 |||||| ||| | ||| |||| Sbjct 208768 TTCTCGGGGAGGATCACCTTGCCC 208745 >seq193 Length=2192004 Score = 122 bits (134), Expect = 1e-22 Identities = 192/267 (72%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 293547 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 293489 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 293488 TGGTGCACCTCTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAATACAACTGCA 293429 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 293428 GCGGCTCTCTGGGCAAGAAGCAG-CTGGACCCGGCGCGCATCAAGCTCATCCGCCACTAC 293370 Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646 |||||| |||| |||| ||| | | ||||| |||||||||| ||||| ||| Sbjct 293369 GTGCAGCTGCTCTACCCCCGCGCCAAG-AACGACCGCGTGTGGACGCTGGAGTTCGTGGG 293311 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 293310 CAAGCTGGACGAGCGCTGCCGGCGCCG 293284 >seq2175 Length=212603 Score = 113 bits (124), Expect = 5e-20 Identities = 284/425 (67%), Gaps = 15/425 (4%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| | ||| || ||||| | | |||| | ||| | ||| |||||| | Sbjct 98162 AGCAGGGCTTTGATATCAGGCTCAATATAAATGGTCGGAAAGCAGCAGCTCTACCTGTTC 98103 Query 83117 ACGGGCGTGCC--GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174 | ||| || || | ||||||| ||||||||| ||||||||||| || | |||| Sbjct 98102 GCAGGCACACCATGTGGGAGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATTGTTGA 98043 Query 83175 GGCACA--CTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTC 83232 || ||| ||| ||||| | |||| || ||||| | || |||| | ||| || Sbjct 98042 GGAACATCCTG--GACCAAGTGATGAACTCGGGGTTGGTCGTGAGCACAGTGGTGTTTTC 97985 Query 83233 GCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTT 83292 || || || | ||| ||||| || |||| |||| | || || || ||||| ||| Sbjct 97984 ACTGGGGGCAGACAGAGCCTCCTACAGCAAGGTGAAG-GGGGGTGCACCTGTGCACTGTT 97926 Query 83293 GACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAG------GACG 83346 ||||| |||||| | || ||||| ||| | |||| || | | | | Sbjct 97925 CACCTCACACTTCGC-AAAAGCATGAAGGTTAGCTCCAACTACAACTTGGGTGGTAGTGG 97867 Query 83347 GACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTG 83406 || |||||| |||||| || |||| |||| ||| || ||||| || | |||||| Sbjct 97866 GATGTGCTTGAGGGAATTCAGGATCAATTTCTTCTTGGCATTCTCCTGATGCCAGAACTG 97807 Query 83407 GTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTT 83466 ||| | ||||| | || ||||| ||| | || || |||| || ||||||||| || Sbjct 97806 GTTGCCTGGGAAGCTGAGTTTGACCAGGCCCTGGGC-CCAAGGCACCACTGCAGCTCCTT 97748 Query 83467 CATCT 83471 ||||| Sbjct 97747 CATCT 97743 >seq90 Length=2936694 Score = 109 bits (120), Expect = 7e-19 Identities = 177/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| | ||||| ||||| ||| ||| | || ||||||||||||||| | Sbjct 875137 AGCAGGGTTTTAATGTCAGGCTCATTGGCAGTGGTTGGAAAGTGGTGGCTGTACCTGCAC 875196 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| || || | ||||||| | |||||| |||||| |||| | || ||||| Sbjct 875197 ACGGGCAAACCATCTGGGCCCACCAGGTACTTCTTGAAGTTTCAGGTGATGTTGTTGCAT 875256 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||| |||||||||||| | | || ||||| | ||| ||||| | || | || Sbjct 875257 CACCCTGGAGACCAGGTGTTAAACTTGGGGTTGGTCAGGAGCGCAGTGGCATCATGACTG 875316 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| | || ||||||||| | | || || ||| |||| || ||| Sbjct 875317 GGGGCAGGCAGAGACTTCTATAGGAAGGCAAGCTGGGGGTGCGCCTGCACACCATTCACC 875376 Query 83297 TCGCACTTCTCGAAG 83311 | ||||||||| ||| Sbjct 875377 TTGCACTTCTCAAAG 875391 >seq1158 Length=656631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/224 (70%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 83111 CTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCG 83170 |||| ||| | ||||| ||| |||||| |||||||| ||||||||||| || | | Sbjct 100769 CTGCACACAGACGTGCTGTCCAGTGCCACCAGGAACTTCTTGAAGTTCCAGGGGACATTG 100710 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC---GTGCTCATG 83227 |||| |||| |||||||||||| |||| || | |||| ||| |||| ||| | ||| Sbjct 100709 TTGCAGCACTCTGGAGACCAGGTGATGAACTCGAGGTCAGTCAGGAGCCCAGTGGT-ATG 100651 Query 83228 TCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCA 83287 || ||| || ||||||| ||| | ||||||| ||||| || | | |||| Sbjct 100650 --ATCACTA-GCCTCGGCAGGCCCTTCTGCAGGAAGGGGAAGAATGGGTCCATCTGTGCA 100594 Query 83288 CCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAA 83331 || || ||| | ||||| |||| | | || || || || || Sbjct 100593 CCATTTGCCTGGGTGTTCTCAAAGACCCTGAAATTGGGTTCAAA 100550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608176839388680