Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq456 138 1e-27
seq17 132 5e-26
seq861 93.3 4e-14
>seq456
Length=1409724
Score = 138 bits (152), Expect = 1e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||||| || || || || ||||| ||||||||| | || || || ||
Sbjct 1113180 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 1113239
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | | |||| || || | || ||||||||||||||| | |||
Sbjct 1113240 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGAC 1113299
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | ||||||| || ||||| |||||||| || | ||||| || || |||
Sbjct 1113300 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 1113359
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||| ||| | || ||||| || || ||||| |||| || |||
Sbjct 1113360 AACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113410
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || || || |||
Sbjct 1113411 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113470
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | || ||||||||||||||| | ||||||
Sbjct 1113471 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113530
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | ||||||| || ||||| |||||||| || | ||||| || || ||||||
Sbjct 1113531 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113590
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| ||| | || ||||| || || ||||| |||| || |||
Sbjct 1113591 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113638
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || || || |||
Sbjct 1113639 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113698
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | || ||||||||||||||| | ||||||
Sbjct 1113699 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113758
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | ||||||| || ||||| |||||||| || | ||||| || || ||||||
Sbjct 1113759 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1113818
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| ||| | || ||||| || || ||||| |||| || |||
Sbjct 1113819 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1113866
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || || || |||
Sbjct 1113867 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1113926
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | || ||||||||||||||| | ||||||
Sbjct 1113927 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1113986
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | ||||||| || ||||| |||||||| || | ||||| || || ||||||
Sbjct 1113987 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1114046
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| ||| | || ||||| || || ||||| |||| || |||
Sbjct 1114047 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1114094
Score = 123 bits (136), Expect = 3e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || || || |||
Sbjct 1114095 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1114154
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | || ||||||||||||||| | ||||||
Sbjct 1114155 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 1114214
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | ||||||| || ||||| |||||||| || | ||||| || || ||||||
Sbjct 1114215 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1114274
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| ||| | || || || || || | || ||||||| |||
Sbjct 1114275 ATCCAGAAAGAGTCGACTCTCCACCTGGTTCTCCGTCTGAGGGGTGGC 1114322
>seq17
Length=4663558
Score = 132 bits (146), Expect = 5e-26
Identities = 173/238 (73%), Gaps = 11/238 (5%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||| || || | || || || ||||||||| | || || || | |
Sbjct 4172749 AATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGAGCCAAG 4172690
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAA---------GAGGGCATCC 40798
||||| | | | |||| |||||| || || | |||||| ||||||||||
Sbjct 4172689 CGACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAACAGGACAAGGAGGGCATCC 4172631
Query 40799 CCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCA 40858
|| | |||||||| | | |||| ||||| ||||||||||| || | |||||||||
Sbjct 4172630 CCCCCGACCAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGT 4172571
Query 40859 ACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||||||| |||| ||||| | || ||||||||||||| ||
Sbjct 4172570 CTGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 4172513
>seq861
Length=883633
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||| || | ||||| || || || || ||||| ||||||||| | || | ||| ||
Sbjct 499408 AAAATACAGGTCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGTTGGAACCC 499467
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| ||| | | || | | | |||| || | | || ||||| ||||||||| | | |
Sbjct 499468 AGCGATACCATGAAGAATGTGAAGGCCAAGACCCAGGATAAAGAAGGCATCCCCCCTGGC 499527
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | ||||||| || ||||| |||||||| || | | || || ||||||
Sbjct 499528 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCACATTCTTTCTGACTAC 499587
Query 40867 AACATCCAGAA 40877
|||||||||||
Sbjct 499588 AACATCCAGAA 499598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514694532967920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |