Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq456 113 4e-20
seq448 84.2 2e-11
>seq456
Length=1409724
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || |||||||| || ||||||||||| | |||||| ||| ||
Sbjct 1114303 ACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1114244
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||| || || || |||||||| || |||
Sbjct 1114243 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 1114184
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| || ||| ||||| | ||| | || |||
Sbjct 1114183 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1114124
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| ||||| || || || || |||||||||
Sbjct 1114123 CCAGTCAGGGTCTTCACGAAGATCTGCATG 1114094
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || |||||||| || ||||||||||| | |||||| ||| ||
Sbjct 1113619 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1113560
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||| || || || |||||||| || |||
Sbjct 1113559 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 1113500
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| || ||| ||||| | ||| | || |||
Sbjct 1113499 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1113440
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| ||||| || || || || |||||||||
Sbjct 1113439 CCAGTCAGGGTCTTCACGAAGATCTGCATG 1113410
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || |||||||| || ||||||||||| | |||||| ||| ||
Sbjct 1113847 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1113788
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||| || || || |||||||| || |||
Sbjct 1113787 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 1113728
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| || ||| ||||| | ||| | || |||
Sbjct 1113727 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1113668
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| ||||| || || || || |||||||||
Sbjct 1113667 CCAGTCAGGGTCTTCACGAAGATCTGCATG 1113638
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || |||||||| || ||||||||||| | |||||| ||| ||
Sbjct 1114075 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1114016
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||| || || || |||||||| || |||
Sbjct 1114015 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 1113956
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| || ||| ||||| | ||| | || |||
Sbjct 1113955 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1113896
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| ||||| || || || || |||||||||
Sbjct 1113895 CCAGTCAGGGTCTTCACGAAGATCTGCATG 1113866
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || |||||||| || ||||||||||| | |||||| ||| ||
Sbjct 1113391 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1113332
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||| || || || |||||||| || |||
Sbjct 1113331 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 1113272
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| || ||| ||||| | ||| | || |||
Sbjct 1113271 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1113212
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || || || ||||||||
Sbjct 1113211 CCAGTCAGGGTCTTCACGAAGATCTGCAT 1113183
>seq448
Length=1420016
Score = 84.2 bits (92), Expect = 2e-11
Identities = 111/153 (73%), Gaps = 1/153 (1%)
Strand=Plus/Plus
Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642
|||||| |||||||| || | |||| |||||||||||||| || || ||||||||||
Sbjct 823515 ATCCTCCAGCTGTTTGCCCACAAAGATCAGACGCTGCTGATCAGG-GGGCTGCCCTCCTT 823573
Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702
|||| |||| ||| || | || |||||| || | | ||| ||| |||||
Sbjct 823574 GTCTTGGGTTTTGGCTTTGACATTCTCTGTGGTGTCACTGGACGCAACCCCGAGGGTCAT 823633
Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 118735
|| |||| || ||| || || ||||| |||||
Sbjct 823634 GGTCTTGCTGGCCAGGGTCTTCACAAAGATCTG 823666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433399658879164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |