Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq137 95.1 2e-14 >seq137 Length=2511308 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| ||||| || |||||||| ||||||||| | || ||||| Sbjct 222073 GCATTTTTTGGAGCACAGCTGAATTCCTTCATCCATGTGATTATGTACTCATACTATGGG 222014 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| | ||||| |||||| ||||||||||| || | || | Sbjct 222013 TTAACTGCATTTGGCCC-ATGGATCCAGAA-GTATCTTTGGTGGAAACGATACTTGACCA 221956 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 221955 TGTTGCAGCTGGT 221943 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | | || ||||| || || |||| |||||| ||||| || || Sbjct 219513 GGTTCAGTTCCATGTGACCATTGGACACACAGCACTGTCTCTTTACACGGATTGTCCCTT 219454 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||||||||||| || ||| | | ||| ||| | || || |||||||| || ||| Sbjct 219453 CCCAAAATGGATGCACTGGGCCCTCATTGCCTACGCGATCAGCTTCATATTTCTCTTTCT 219394 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||||| || | |||||||| Sbjct 219393 TAACTTCTATGTTCGGACATACAA 219370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922256674078680