Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1215 102 9e-17
seq471 100 3e-16
seq2576 98.7 1e-15
seq323 98.7 1e-15
seq17 98.7 1e-15
seq69 91.5 2e-13
seq404 89.7 6e-13
seq255 82.4 9e-11
>seq1215
Length=622372
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| || | ||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 337521 TTTGCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 337580
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 337581 ACTATACTAACGAGGA 337596
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 274122 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 274063
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 274062 ATACTAACGAGGA 274050
>seq471
Length=1376740
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1127050 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1126991
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 1126990 ATACTAACGAGGA 1126978
>seq2576
Length=112281
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 90940 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 90999
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 91000 TACTAACGAGGA 91011
>seq323
Length=1690371
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 480748 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 480807
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 480808 TACTAACGAGGA 480819
>seq17
Length=4663558
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 4183238 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4183297
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 4183298 TACTAACGAGGA 4183309
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 4185661 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 4185720
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 4185721 ATACTAACGAGGA 4185733
Score = 95.1 bits (104), Expect = 1e-14
Identities = 165/240 (69%), Gaps = 15/240 (6%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| || || |||| ||||| |||| ||| ||||| || || ||||| |||| |
Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || ||| | || || ||||| || || || || || | | ||||||||||| ||
Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC------------ACCGTGTCG 43124
| || |||||||||| || ||| | | || | ||||| | ||||||
Sbjct 4172633 ATGCCCTCCTTGTCC-TG--TTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCG 4172689
Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|| | ||||| || | |||||||| || || || | ||||| || ||||| ||||||
Sbjct 4172690 CTTGGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749
>seq69
Length=3213852
Score = 91.5 bits (100), Expect = 2e-13
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2058348 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 2058294
>seq404
Length=1519820
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 730916 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 730857
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 730856 TACTAACGAGGA 730845
>seq255
Length=1922131
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1261814 TCTCCCCGTCGAGGAATCGAACCCCAGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1261873
Query 60125 ATACTACCGAGGA 60137
| |||| |||||
Sbjct 1261874 ACACTAAAGAGGA 1261886
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571235296694760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |