Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1215 102 9e-17 seq471 100 3e-16 seq2576 98.7 1e-15 seq323 98.7 1e-15 seq17 98.7 1e-15 seq69 91.5 2e-13 seq404 89.7 6e-13 seq255 82.4 9e-11 >seq1215 Length=622372 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 337521 TTTGCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 337580 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 337581 ACTATACTAACGAGGA 337596 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 274122 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 274063 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 274062 ATACTAACGAGGA 274050 >seq471 Length=1376740 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1127050 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1126991 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1126990 ATACTAACGAGGA 1126978 >seq2576 Length=112281 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 90940 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 90999 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 91000 TACTAACGAGGA 91011 >seq323 Length=1690371 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 480748 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 480807 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 480808 TACTAACGAGGA 480819 >seq17 Length=4663558 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4183238 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4183297 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4183298 TACTAACGAGGA 4183309 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4185661 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 4185720 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4185721 ATACTAACGAGGA 4185733 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 15/240 (6%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || |||| ||||| |||| ||| ||||| || || ||||| |||| | Sbjct 4172513 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4172572 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || ||||| || || || || || | | ||||||||||| || Sbjct 4172573 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGG 4172632 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC------------ACCGTGTCG 43124 | || |||||||||| || ||| | | || | ||||| | |||||| Sbjct 4172633 ATGCCCTCCTTGTCC-TG--TTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCG 4172689 Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||| || | |||||||| || || || | ||||| || ||||| |||||| Sbjct 4172690 CTTGGCTCCACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749 >seq69 Length=3213852 Score = 91.5 bits (100), Expect = 2e-13 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2058348 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 2058294 >seq404 Length=1519820 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 730916 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 730857 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 730856 TACTAACGAGGA 730845 >seq255 Length=1922131 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1261814 TCTCCCCGTCGAGGAATCGAACCCCAGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1261873 Query 60125 ATACTACCGAGGA 60137 | |||| ||||| Sbjct 1261874 ACACTAAAGAGGA 1261886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571235296694760