Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq1109 1701 0.0
seq810 172 4e-38
>seq1109
Length=686466
Score = 1701 bits (1886), Expect = 0.0
Identities = 1404/1717 (82%), Gaps = 53/1717 (3%)
Strand=Plus/Plus
Query 107084 TCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAAG------ 107137
||||||||||| | ||| ||||| || ||||||| ||| || || |||||
Sbjct 664236 TCCCAGCATGAATGGCTTGTTTGTAGGGTCAGGTTCTAGACCTCTGTCAACAAGCCAGGG 664295
Query 107138 ---------GGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATC 107188
| || | |||||| | ||||| |||||||| |||| ||||||| | | |
Sbjct 664296 ATAAGAGGGGCTCCTCGGCAGGTCATGACTAAGGATATTAATCTAGAGAAGACCTATCTT 664355
Query 107189 TTTACCATCACTCTGGAGTTGAACTTGATGTTCT--------------GGATTAGTTTGT 107234
||| ||| | || |||||| || |||||||||| || |||||||||
Sbjct 664356 TTTGCCACCCCTTTGGAGTCGAGCTTGATGTTCCCATGAATACATTCAGGGTTAGTTTGT 664415
Query 107235 AATTAAAGGCATTTTGTTCTGTCCAAGGATC--TCCTCCTCCACCTTGCCTGTGCCCAAA 107292
|||| |||||||||||||||||||||||||| ||||||||| |||| ||||||||| ||
Sbjct 664416 AATTGAAGGCATTTTGTTCTGTCCAAGGATCCGTCCTCCTCCTCCTTCCCTGTGCCCCAA 664475
Query 107293 CTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGAC 107352
|||| ||| | || ||| || |||||||| | ||||||||||| |||| |||||| |
Sbjct 664476 CTCTACTGGTTTCTCATTCCGTGAAGATGATTTGGTGGAAGAAGCAGCTGTGCCGGCAGC 664535
Query 107353 ATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCC 107412
||| |||||||||||||||||||| |||||||||||| |||| | ||||| |||| |
Sbjct 664536 GTCACCTGTGGGCCCTGGGCTGCTACATGCTGCTGGCCATTGTCGCACTGAGGTTTTCTC 664595
Query 107413 TCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGC 107472
|||| | |||||||| | |||||| |||||||||||||||| ||||||| || |||
Sbjct 664596 TCAGACTGAAATGTGACTTTGATTCCCTGGATCTGGAGTCCAGCGACTTCCGAAGCCAGG 664655
Query 107473 ACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTT 107532
||||||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 664656 ACTGTAGGGACATCTTGTACAACTCCCTGAAGCTGCCGGCAAAGAGATCTATCAACTGTT 664715
Query 107533 CTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAG 107592
|||| |||| |||||| ||| ||||||| |||| ||||| ||||||||||| |
Sbjct 664716 CTGGAATCATCCGAGGGAACCGCCGAGCAGTGACAGAGGCTCTCCTGGACAACCTGGAGG 664775
Query 107593 TGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTG 107652
| ||||| |||||| |||| |||| | ||| | ||||| ||||| ||| |||||||||
Sbjct 664776 TCAAGAAGAAGCGGGAGCCTTTCACAGACACTGACTACCTTAACATGACCCGAGACTGTG 664835
Query 107653 AGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACT 107712
||| |||||||||| ||||||||||||||| |||||| ||||| ||||||||| ||||||
Sbjct 664836 AGCACTTCAAGGCCGAAAGGAAGTTCATACGGTTCCCTCTGAGCAAAGAAGAGTTAGACT 664895
Query 107713 TCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGC 107772
|||| || || ||||| |||||||||||||||||||| || ||||| ||| | |||||||
Sbjct 664896 TCCCTATCGCGTACTCTATGGTGGTCCATGAGAAGATAGAGAACTTCGAAAGACTGCTGC 664955
Query 107773 GAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGA 107832
|||| ||||||||||||||||||| ||||||||||| ||||||| ||| |||||||| |
Sbjct 664956 GAGCTTTGTATGCCCCTCAGAACATCTACTGTGTCCATGTGGATGAGAAATCCCCAGAAA 665015
Query 107833 CTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTA 107892
||||||||||||| |||||||| ||| | | |||||||| ||||||||||| |||||||
Sbjct 665016 CTTTCAAAGAGGCAGTCAAGGCAATTGTGTTGTGCTTCCCAAATGTCTTCATAGCCAGTA 665075
Query 107893 AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGG 107952
||||||| | |||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 665076 AGTTGGTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTCAACTGTATGG 665135
Query 107953 AAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACT 108012
| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 665136 AGGACTTGCTCCAGAGCTCAGTGCCATGGAAATACTTACTGAATACGTGTGGGACAGACT 665195
Query 108013 TCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072
| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 665196 TTCCTATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACA 665255
Query 108073 GTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG 108132
||||||||||||| |||| | |||| ||||||| |||||||| |||| ||||||||
Sbjct 665256 GTATGGAGTCTGAAAAACCTACCGAGTACAAAAAATCTCGCTGGACGTACCACTATGAGG 665315
Query 108133 TGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCA 108192
||||||||| | ||||| ||||||||||||||||| ||||| || |||||| | || |
Sbjct 665316 TGACAGACAAATTGTACATAACCAGCAAGATGAAGGATCCTCCGCCGGATAATATGCCTA 665375
Query 108193 TGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACA 108252
||||||| || ||||||||| ||||||| |||||| ||||||||| ||||||||||| |
Sbjct 665376 TGTTCACGGGCAATGCCTATATTGTGGCTTCTCGAAACTTTGTCCAGCATGTCTTAGAGA 665435
Query 108253 ACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACC 108312
|||| || |||||||||||| | || ||||| |||||||||||||||||||| || || |
Sbjct 665436 ACCCCAAGTCCCAAAGACTGATCGAGTGGGTGAAAGACACCTATAGCCCCGATGAGCATC 665495
Query 108313 TCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGT 108372
|||||||||||||||||||||| ||||||||||| || ||| |||| |||||||||||
Sbjct 665496 TCTGGGCCACCCTTCAGCGTGCGCCGTGGATGCCGGGTTCTATTCCCTACCACCCCAAGT 665555
Query 108373 ATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAG 108432
||||||||| |||||||| ||||| |||||||| ||||||||||| ||| |||||||
Sbjct 665556 TTCACATCTCCGACATGACAGCCATTGCCAGGCTGGTCAAGTGGCAAAGCCATGAGGGAG 665615
Query 108433 ATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492
| ||| |||||||| ||||||||||| ||||| |||| ||| | | || | | ||
Sbjct 665616 ACATCACTATGGGGGCACCTTATGCACCTTGCTCCGGAACCCACCAGCGGTCTGTGTGTG 665675
Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552
|||| ||| | ||||||||| |||||||||| || ||||||||||| ||||| |||||||
Sbjct 665676 TTTATGGGACTGGGGACCTGCACTGGATTCTTCAAAACCATCACCTGTTGGCTAACAAGT 665735
Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612
||||||| | ||| ||||| || || || |||||||||||||||||| ||||| ||||||
Sbjct 665736 TTGACCCAAAGGTAGATGACAATGTTCTTCAGTGCTTAGAAGAGTACTTACGTTATAAGG 665795
Query 108613 CCATCTATGGGACTGAACTTTGAGCTGC------------------ACTGTGGGCCAGGG 108654
||||||||||||||||||| |||| | | ||||||| ||||
Sbjct 665796 CCATCTATGGGACTGAACTCTGAGATACCCTATCAGAGAATTGCTACCTGTGGGGCAGGA 665855
Query 108655 ACTGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGG 108714
||||||| ||||||||||||| || |||| || |||||||||||||| ||||| |||
Sbjct 665856 ACTGTGCAAACATGCCCAGGGGGTGCTGGGAC--AGTGGGGTGGGGGACCGGGGCTCTGG 665913
Query 108715 AATCCATGGCATCCCCCAGGGTCAGAGGGCTGCTTTG 108751
||||| ||| | |||||| ||||| ||| |||| ||
Sbjct 665914 AATCCTTGGTA-CCCCCA-TGTCAGGGGGTTGCTATG 665948
>seq810
Length=940331
Score = 172 bits (190), Expect = 4e-38
Identities = 619/949 (65%), Gaps = 43/949 (5%)
Strand=Plus/Plus
Query 107632 TCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGT---TCATACAGTTCC 107688
||||||| |||||||||||| | |||| | | | || | |||| ||| |
Sbjct 564555 TCAACATGACCAGAGACTGTAATTCTTTCATCAAGCGACGCAAATACATCATGCAG---C 564611
Query 107689 CACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGA 107748
|||| ||||| |||||| || || ||||| ||||| || || ||||| || | || |
Sbjct 564612 CACTTAGTAAGGAAGAGGCGGAGTTTCCCATAGCCTATTCCATAGTGGTTCACCACAAAA 564671
Query 107749 TTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGT 107806
| |||| |||| ||||| ||| | ||| | || |||||| |||| | ||||| |
Sbjct 564672 TCGAAATGCTTGACCGGCTCCTGAGGGCCATCTACATGCCCC--AGAATTTCTACTGCAT 564729
Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866
|||||||| ||||| | || | || | ||||| | | ||| |||||
Sbjct 564730 TCACGTGGACAGAAAGTCAGCCGATTCGTTTTTGGCCGCGGTGATTGGCATCGCGTCCTG 564789
Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926
|||| || ||||| |||||||| || ||| ||||| |||||||| ||| |
Sbjct 564790 CTTCAGTAACGTCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTGTATGCCTCTTGGAGTCG 564849
Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAG 107984
|| || || ||||| ||||| ||| ||||| | || ||| | | ||||| ||||||
Sbjct 564850 GGTTCAGGCCGACCTCAACTGCATGCAAGACGT-CTACAG-GATGAGTGCGGACTGGAAG 564907
Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044
||||| | ||| ||||| | ||||| || || || ||||| || || |||| |
Sbjct 564908 TACTTGATAAATCTTTGCGGTATGGACTTTCCTATTAAAACCAACTTGGAAATTGTCCAG 564967
Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTGAGTCC 108101
|||||| | ||| |||| | |||| | || ||||| | || || |
Sbjct 564968 AAGCTCAAGTCGCTGATGGGTGAAAACAACCTAGAAACTGAGAGAATGCCGTCCAA---T 565024
Query 108102 aaaaaaaaTCGCTGGAAATACCGCTA-TGAGGTGACAGACACACTGTACCCT-ACCAGCA 108159
|||||| | | |||||| | | || || || | || | | || || | ||
Sbjct 565025 AAAAAAGAAAGGTGGAAAAAGCATTACACAGTTGTTA-----ACGGAAAGCTGACGAACA 565079
Query 108160 AGATGAAGGAC-----CCTCCC-CCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213
| || ||| ||||| ||| | | ||| |||| |||| | ||||||||
Sbjct 565080 CGGGGACTGACAAAATGCTCCCTCCTCTTGAAACACCTCTGTTTTCAGGCAGTGCCTATT 565139
Query 108214 TTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGG 108273
| |||| | | | | || |||| |||| || ||| ||||| |
Sbjct 565140 TCGTGGTCAGTAGGAAGTACGTGGGGTATGTGCTAGAGAATGAAAAAATCCAAAAGTTTA 565199
Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333
| || |||| |||||||| || ||||| || || | ||||||||||| | ||| | |
Sbjct 565200 TGGAGTGGGCAAAAGACACGTACAGCCCGGATGAGTATCTCTGGGCCACTATCCAGAG-G 565258
Query 108334 CTCCGTGGATG--CCTGGCT--CTGTTCCT-AGCCACCCCAAGTATCACATCTCAGACAT 108388
||| | |||| || |||| |||| ||| ||||| |||||| |||| || |||||
Sbjct 565259 ATCCCT-GATGTCCCGGGCTCCCTGTCCCTAAGCCA---GAAGTATGACATGTCCGACAT 565314
Query 108389 GACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGC 108448
| || || || ||| ||||||| ||||||||| ||| || ||||| || ||| ||
Sbjct 565315 GCACGCGATTGCAAGGTTCGTCAAATGGCAGTACTTCGAAGGTGATGTTTCCAAGGGTGC 565374
Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508
|| || |||||||| ||| |||| | | | | ||| | | ||| || || ||
Sbjct 565375 CCCCTACCCACCCTGCAATGGGGTCCACGTGCGTTCTGTGTGCGTGTTCGGAGCAGGTGA 565434
Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
| || ||||||| | | || |||||| | || || ||||||||||||
Sbjct 565435 CTTGAACTGGATGTTACGCAAGCATCACTTGTTTGCCAACAAGTTTGAC 565483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347923011200358
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