Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1109 1701 0.0 seq810 172 4e-38 >seq1109 Length=686466 Score = 1701 bits (1886), Expect = 0.0 Identities = 1404/1717 (82%), Gaps = 53/1717 (3%) Strand=Plus/Plus Query 107084 TCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAAG------ 107137 ||||||||||| | ||| ||||| || ||||||| ||| || || ||||| Sbjct 664236 TCCCAGCATGAATGGCTTGTTTGTAGGGTCAGGTTCTAGACCTCTGTCAACAAGCCAGGG 664295 Query 107138 ---------GGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATC 107188 | || | |||||| | ||||| |||||||| |||| ||||||| | | | Sbjct 664296 ATAAGAGGGGCTCCTCGGCAGGTCATGACTAAGGATATTAATCTAGAGAAGACCTATCTT 664355 Query 107189 TTTACCATCACTCTGGAGTTGAACTTGATGTTCT--------------GGATTAGTTTGT 107234 ||| ||| | || |||||| || |||||||||| || ||||||||| Sbjct 664356 TTTGCCACCCCTTTGGAGTCGAGCTTGATGTTCCCATGAATACATTCAGGGTTAGTTTGT 664415 Query 107235 AATTAAAGGCATTTTGTTCTGTCCAAGGATC--TCCTCCTCCACCTTGCCTGTGCCCAAA 107292 |||| |||||||||||||||||||||||||| ||||||||| |||| ||||||||| || Sbjct 664416 AATTGAAGGCATTTTGTTCTGTCCAAGGATCCGTCCTCCTCCTCCTTCCCTGTGCCCCAA 664475 Query 107293 CTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGAC 107352 |||| ||| | || ||| || |||||||| | ||||||||||| |||| |||||| | Sbjct 664476 CTCTACTGGTTTCTCATTCCGTGAAGATGATTTGGTGGAAGAAGCAGCTGTGCCGGCAGC 664535 Query 107353 ATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCC 107412 ||| |||||||||||||||||||| |||||||||||| |||| | ||||| |||| | Sbjct 664536 GTCACCTGTGGGCCCTGGGCTGCTACATGCTGCTGGCCATTGTCGCACTGAGGTTTTCTC 664595 Query 107413 TCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGC 107472 |||| | |||||||| | |||||| |||||||||||||||| ||||||| || ||| Sbjct 664596 TCAGACTGAAATGTGACTTTGATTCCCTGGATCTGGAGTCCAGCGACTTCCGAAGCCAGG 664655 Query 107473 ACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTT 107532 ||||||||||||| |||||||| |||||||||||| ||||||||||| |||||||||| Sbjct 664656 ACTGTAGGGACATCTTGTACAACTCCCTGAAGCTGCCGGCAAAGAGATCTATCAACTGTT 664715 Query 107533 CTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAG 107592 |||| |||| |||||| ||| ||||||| |||| ||||| ||||||||||| | Sbjct 664716 CTGGAATCATCCGAGGGAACCGCCGAGCAGTGACAGAGGCTCTCCTGGACAACCTGGAGG 664775 Query 107593 TGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTG 107652 | ||||| |||||| |||| |||| | ||| | ||||| ||||| ||| ||||||||| Sbjct 664776 TCAAGAAGAAGCGGGAGCCTTTCACAGACACTGACTACCTTAACATGACCCGAGACTGTG 664835 Query 107653 AGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACT 107712 ||| |||||||||| ||||||||||||||| |||||| ||||| ||||||||| |||||| Sbjct 664836 AGCACTTCAAGGCCGAAAGGAAGTTCATACGGTTCCCTCTGAGCAAAGAAGAGTTAGACT 664895 Query 107713 TCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGC 107772 |||| || || ||||| |||||||||||||||||||| || ||||| ||| | ||||||| Sbjct 664896 TCCCTATCGCGTACTCTATGGTGGTCCATGAGAAGATAGAGAACTTCGAAAGACTGCTGC 664955 Query 107773 GAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGA 107832 |||| ||||||||||||||||||| ||||||||||| ||||||| ||| |||||||| | Sbjct 664956 GAGCTTTGTATGCCCCTCAGAACATCTACTGTGTCCATGTGGATGAGAAATCCCCAGAAA 665015 Query 107833 CTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTA 107892 ||||||||||||| |||||||| ||| | | |||||||| ||||||||||| ||||||| Sbjct 665016 CTTTCAAAGAGGCAGTCAAGGCAATTGTGTTGTGCTTCCCAAATGTCTTCATAGCCAGTA 665075 Query 107893 AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGG 107952 ||||||| | |||||||||||||||||||||||| ||||| |||||||| |||||||||| Sbjct 665076 AGTTGGTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTCAACTGTATGG 665135 Query 107953 AAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACT 108012 | ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct 665136 AGGACTTGCTCCAGAGCTCAGTGCCATGGAAATACTTACTGAATACGTGTGGGACAGACT 665195 Query 108013 TCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072 | || |||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 665196 TTCCTATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACA 665255 Query 108073 GTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG 108132 ||||||||||||| |||| | |||| ||||||| |||||||| |||| |||||||| Sbjct 665256 GTATGGAGTCTGAAAAACCTACCGAGTACAAAAAATCTCGCTGGACGTACCACTATGAGG 665315 Query 108133 TGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCA 108192 ||||||||| | ||||| ||||||||||||||||| ||||| || |||||| | || | Sbjct 665316 TGACAGACAAATTGTACATAACCAGCAAGATGAAGGATCCTCCGCCGGATAATATGCCTA 665375 Query 108193 TGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACA 108252 ||||||| || ||||||||| ||||||| |||||| ||||||||| ||||||||||| | Sbjct 665376 TGTTCACGGGCAATGCCTATATTGTGGCTTCTCGAAACTTTGTCCAGCATGTCTTAGAGA 665435 Query 108253 ACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACC 108312 |||| || |||||||||||| | || ||||| |||||||||||||||||||| || || | Sbjct 665436 ACCCCAAGTCCCAAAGACTGATCGAGTGGGTGAAAGACACCTATAGCCCCGATGAGCATC 665495 Query 108313 TCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGT 108372 |||||||||||||||||||||| ||||||||||| || ||| |||| ||||||||||| Sbjct 665496 TCTGGGCCACCCTTCAGCGTGCGCCGTGGATGCCGGGTTCTATTCCCTACCACCCCAAGT 665555 Query 108373 ATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAG 108432 ||||||||| |||||||| ||||| |||||||| ||||||||||| ||| ||||||| Sbjct 665556 TTCACATCTCCGACATGACAGCCATTGCCAGGCTGGTCAAGTGGCAAAGCCATGAGGGAG 665615 Query 108433 ATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492 | ||| |||||||| ||||||||||| ||||| |||| ||| | | || | | || Sbjct 665616 ACATCACTATGGGGGCACCTTATGCACCTTGCTCCGGAACCCACCAGCGGTCTGTGTGTG 665675 Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552 |||| ||| | ||||||||| |||||||||| || ||||||||||| ||||| ||||||| Sbjct 665676 TTTATGGGACTGGGGACCTGCACTGGATTCTTCAAAACCATCACCTGTTGGCTAACAAGT 665735 Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612 ||||||| | ||| ||||| || || || |||||||||||||||||| ||||| |||||| Sbjct 665736 TTGACCCAAAGGTAGATGACAATGTTCTTCAGTGCTTAGAAGAGTACTTACGTTATAAGG 665795 Query 108613 CCATCTATGGGACTGAACTTTGAGCTGC------------------ACTGTGGGCCAGGG 108654 ||||||||||||||||||| |||| | | ||||||| |||| Sbjct 665796 CCATCTATGGGACTGAACTCTGAGATACCCTATCAGAGAATTGCTACCTGTGGGGCAGGA 665855 Query 108655 ACTGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGG 108714 ||||||| ||||||||||||| || |||| || |||||||||||||| ||||| ||| Sbjct 665856 ACTGTGCAAACATGCCCAGGGGGTGCTGGGAC--AGTGGGGTGGGGGACCGGGGCTCTGG 665913 Query 108715 AATCCATGGCATCCCCCAGGGTCAGAGGGCTGCTTTG 108751 ||||| ||| | |||||| ||||| ||| |||| || Sbjct 665914 AATCCTTGGTA-CCCCCA-TGTCAGGGGGTTGCTATG 665948 >seq810 Length=940331 Score = 172 bits (190), Expect = 4e-38 Identities = 619/949 (65%), Gaps = 43/949 (5%) Strand=Plus/Plus Query 107632 TCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGT---TCATACAGTTCC 107688 ||||||| |||||||||||| | |||| | | | || | |||| ||| | Sbjct 564555 TCAACATGACCAGAGACTGTAATTCTTTCATCAAGCGACGCAAATACATCATGCAG---C 564611 Query 107689 CACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGA 107748 |||| ||||| |||||| || || ||||| ||||| || || ||||| || | || | Sbjct 564612 CACTTAGTAAGGAAGAGGCGGAGTTTCCCATAGCCTATTCCATAGTGGTTCACCACAAAA 564671 Query 107749 TTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGT 107806 | |||| |||| ||||| ||| | ||| | || |||||| |||| | ||||| | Sbjct 564672 TCGAAATGCTTGACCGGCTCCTGAGGGCCATCTACATGCCCC--AGAATTTCTACTGCAT 564729 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 |||||||| ||||| | || | || | ||||| | | ||| ||||| Sbjct 564730 TCACGTGGACAGAAAGTCAGCCGATTCGTTTTTGGCCGCGGTGATTGGCATCGCGTCCTG 564789 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 |||| || ||||| |||||||| || ||| ||||| |||||||| ||| | Sbjct 564790 CTTCAGTAACGTCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTGTATGCCTCTTGGAGTCG 564849 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAG 107984 || || || ||||| ||||| ||| ||||| | || ||| | | ||||| |||||| Sbjct 564850 GGTTCAGGCCGACCTCAACTGCATGCAAGACGT-CTACAG-GATGAGTGCGGACTGGAAG 564907 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 ||||| | ||| ||||| | ||||| || || || ||||| || || |||| | Sbjct 564908 TACTTGATAAATCTTTGCGGTATGGACTTTCCTATTAAAACCAACTTGGAAATTGTCCAG 564967 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTGAGTCC 108101 |||||| | ||| |||| | |||| | || ||||| | || || | Sbjct 564968 AAGCTCAAGTCGCTGATGGGTGAAAACAACCTAGAAACTGAGAGAATGCCGTCCAA---T 565024 Query 108102 aaaaaaaaTCGCTGGAAATACCGCTA-TGAGGTGACAGACACACTGTACCCT-ACCAGCA 108159 |||||| | | |||||| | | || || || | || | | || || | || Sbjct 565025 AAAAAAGAAAGGTGGAAAAAGCATTACACAGTTGTTA-----ACGGAAAGCTGACGAACA 565079 Query 108160 AGATGAAGGAC-----CCTCCC-CCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213 | || ||| ||||| ||| | | ||| |||| |||| | |||||||| Sbjct 565080 CGGGGACTGACAAAATGCTCCCTCCTCTTGAAACACCTCTGTTTTCAGGCAGTGCCTATT 565139 Query 108214 TTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGG 108273 | |||| | | | | || |||| |||| || ||| ||||| | Sbjct 565140 TCGTGGTCAGTAGGAAGTACGTGGGGTATGTGCTAGAGAATGAAAAAATCCAAAAGTTTA 565199 Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 | || |||| |||||||| || ||||| || || | ||||||||||| | ||| | | Sbjct 565200 TGGAGTGGGCAAAAGACACGTACAGCCCGGATGAGTATCTCTGGGCCACTATCCAGAG-G 565258 Query 108334 CTCCGTGGATG--CCTGGCT--CTGTTCCT-AGCCACCCCAAGTATCACATCTCAGACAT 108388 ||| | |||| || |||| |||| ||| ||||| |||||| |||| || ||||| Sbjct 565259 ATCCCT-GATGTCCCGGGCTCCCTGTCCCTAAGCCA---GAAGTATGACATGTCCGACAT 565314 Query 108389 GACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGC 108448 | || || || ||| ||||||| ||||||||| ||| || ||||| || ||| || Sbjct 565315 GCACGCGATTGCAAGGTTCGTCAAATGGCAGTACTTCGAAGGTGATGTTTCCAAGGGTGC 565374 Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508 || || |||||||| ||| |||| | | | | ||| | | ||| || || || Sbjct 565375 CCCCTACCCACCCTGCAATGGGGTCCACGTGCGTTCTGTGTGCGTGTTCGGAGCAGGTGA 565434 Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || ||||||| | | || |||||| | || || |||||||||||| Sbjct 565435 CTTGAACTGGATGTTACGCAAGCATCACTTGTTTGCCAACAAGTTTGAC 565483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347923011200358