Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq497 100 3e-16 >seq497 Length=1337528 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 319049 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 318991 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 318990 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 318931 Query 13975 CATAAAATCAAATGGATTT 13993 |||||| |||||||||||| Sbjct 318930 CATAAAGTCAAATGGATTT 318912 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || |||||||| ||||| || || || ||||| | Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708 Query 14346 C 14346 | Sbjct 317707 C 317707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481854409387560