Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq497 123 3e-23
seq3057 122 1e-22
seq845 98.7 1e-15
seq590 98.7 1e-15
>seq497
Length=1337528
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || ||||||||||| || ||||| |||||||| || |
Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || || || || || ||||||||||||||||| || || |||||||
Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708
Query 33724 CAATAAGTCTCTCTCC 33739
| | || || |||||
Sbjct 317707 CCACAACCCTTTCTCC 317692
>seq3057
Length=47849
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| ||||| || || || || ||||| ||||| |
Sbjct 11468 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATG 11409
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 11408 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 11349
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 11348 CTGTTTCTTATACCATA 11332
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||||||||| |||||||| ||||||||||| || | || || || || | |
Sbjct 2652 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACG 2593
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 2592 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 2533
Query 63383 CGGTTCCAAGTATATGGC 63400
|| |||| ||| || ||
Sbjct 2532 AGGCTCCAGGTAAATAGC 2515
>seq845
Length=896685
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| ||| || | ||||| || || |||||||||| || |||
Sbjct 415779 GTTACTTTCTATGATGTATATATTATTCTGCAAGCATTTATACTGACTACTGCTGTATTT 415720
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| | ||||| || ||||||||| || ||||||||||||| ||| ||| | ||||
Sbjct 415719 CTTGGTTTGACTGGATATACTCTACAGTCTAAGAGAGATTTCACCAAATTTGGAGCAGG 415661
Score = 91.5 bits (100), Expect = 2e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231
|||||||||||||||||||| |||||||||| ||||| ||||| || ||||| ||||||
Sbjct 435260 TGCTCCTCCATCGAGGACGATTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGTGTGCAC 435201
Query 188232 ATACGAATGG 188241
|| |||||||
Sbjct 435200 ATCCGAATGG 435191
Score = 86.0 bits (94), Expect = 8e-12
Identities = 82/104 (79%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACA 188299
|| |||||||||||||||||| | |||||| ||| ||| ||| ||||| || | |||
Sbjct 421566 GCCTTTCTAAGAAAAGTCTACAGCATCCTTTCTCTGCAAGTTCTCTTAACTACAGTGACA 421507
Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACA 188343
||| | | |||||||||||||| | || ||||||||| ||||
Sbjct 421506 GCTTCTTTTTTTTTATACTTTGAGTCTATACGGACATTTGTACA 421463
>seq590
Length=1172511
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| ||||| || || | ||| || |||||||||||||| ||||| || || | || ||
Sbjct 827236 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 827177
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
||||| ||||| | ||| || ||||| || ||||| || |||||||| |||||||| ||
Sbjct 827176 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 827118
Score = 93.3 bits (102), Expect = 5e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|||||||||||||| ||||||||||||||||||||||| || |||| || ||||||
Sbjct 812806 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 812747
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074
||||| || |||| | | || || ||||| | | || ||| || ||||
Sbjct 812746 TATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 812698
Score = 86.0 bits (94), Expect = 8e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139
|| ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || ||| |
Sbjct 809075 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 809016
Query 34140 TATTGGATTGGGAAAATAACAAATC 34164
||||||||||| || || |||||||
Sbjct 809015 TATTGGATTGGAAAGATGACAAATC 808991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629176233119760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |