Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq497 116 3e-21 seq590 114 1e-20 seq3057 102 8e-17 >seq497 Length=1337528 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | || ||||||| || ||||| || Sbjct 317825 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 317766 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| |||||||| ||||| || Sbjct 317765 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCC 317706 Query 11774 ACTACTCTTTCTCC 11787 || || |||||||| Sbjct 317705 ACAACCCTTTCTCC 317692 >seq590 Length=1172511 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 827238 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCT 827179 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| || || || ||||| ||||| | Sbjct 827178 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 827119 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 827118 CCACCACTCTTTCCCC 827103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || || Sbjct 813696 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 813637 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | |||||| ||| Sbjct 813636 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACCTCC 813591 >seq3057 Length=47849 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| ||||| ||||||||| Sbjct 11468 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATG 11409 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| || || || || | Sbjct 11408 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 11349 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 11348 CTGTTTCTTATACCAT 11333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468047683626480