Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq845 174 2e-38 seq497 132 6e-26 seq3057 125 9e-24 seq590 102 1e-16 seq3107 84.2 3e-11 >seq845 Length=896685 Score = 174 bits (192), Expect = 2e-38 Identities = 152/189 (80%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 9244 CTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAG 9303 ||||||||| | | ||||| |||| ||| || ||||||| ||||||||||| |||| | Sbjct 408812 CTTCCAAAAACCGCAACAGGTGCAGGAAGAGGTTGATGACATCCAAGTAGAGGCTGATGG 408871 Query 9304 AGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAA 9363 |||||| ||||| |||||||| || ||| |||| || |||||||| |||||||| || | Sbjct 408872 CGGCTAATACATACTCTTCAGGTGACAGCCTATGCATCAGTGAGTGTGTGTCATAAATGA 408931 Query 9364 TGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCCACTGTTTCACTTT 9423 ||||||| || || | |||||| || | ||||| || ||||||||||||||||| ||| | Sbjct 408932 TGAATCCACAAAAGAGAAGGGCTCCCACAGCAGCCAAGACCAGCTCCACTGTTTGACTAT 408991 Query 9424 GCACAAATA 9432 | ||||| Sbjct 408992 AGAAAAATA 409000 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||||||||||| || |||||||||||| |||||| | ||||| Sbjct 415661 CCTGCTCCAAATTTGGTGAAATCTCTCTTAGACTGTAGAGTATATCCAGTCAAACCAAGA 415720 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || ||||||||||| || || ||||||| || | || ||||||||||||||||| Sbjct 415721 AATACAGCAGTAGTCAGTATAAATGCTTGCAGAATAATATATACATCATAGAAAGTAAC 415779 Score = 109 bits (120), Expect = 7e-19 Identities = 91/108 (84%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 435191 CCATTCGGATGTGCACACTGGCGGAGGCCACGCAGCTGCCATAGTTGAAATCGTCCTCGA 435250 Query 9907 TGGAGGAGCACGCGTA--GAGGCTCGGCAT-GGCCATGGCGGC-GCAG 9950 |||||||||| | ||| | || |||| | ||||||| |||| |||| Sbjct 435251 TGGAGGAGCAGGGGTAGCGGGGGTCGGGGTCGGCCATGTCGGCAGCAG 435298 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9744 TGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTTGTTAAA 9803 |||| || | |||| || | |||||||||||||| | | || ||| | || ||||| Sbjct 421463 TGTACAAATGTCCGTATAGACTCAAAGTATAAAAAAAAAGAAGCTGTCACTGTAGTTAAG 421522 Query 9804 AGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847 |||| ||| ||| ||||||| | |||||||||||||||||| || Sbjct 421523 AGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAAGGC 421566 >seq497 Length=1337528 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||||||||| || ||||| |||||||| || | Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708 Query 36300 CAATAAGTCTCTCTCC 36315 | | || || ||||| Sbjct 317707 CCACAACCCTTTCTCC 317692 >seq3057 Length=47849 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| | Sbjct 11468 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATG 11409 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 11408 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 11349 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 11348 CTGTTTCTTATACCATA 11332 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 2652 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACG 2593 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 2592 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 2533 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 2532 AGGCTCCAGGTAAATAGC 2515 >seq590 Length=1172511 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| ||||||||||||||||| ||||| || || | || || Sbjct 827236 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 827177 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| || Sbjct 827176 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 827118 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 |||||||||||||| ||||| ||||||||||||||||| || |||| || |||||| Sbjct 812806 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 812747 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 36650 ||||| || | || | | || || ||||| | | || ||| || |||| Sbjct 812746 TATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 812698 >seq3107 Length=44217 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 40437 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGA 40378 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | || || | || || ||| | || || |||| ||| || | Sbjct 40377 TGGCATAGTCAGGGTGCTCAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTA 40318 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 40317 GTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 40272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657502557956280