Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq845 174 2e-38
seq497 132 6e-26
seq3057 125 9e-24
seq590 102 1e-16
seq3107 84.2 3e-11
>seq845
Length=896685
Score = 174 bits (192), Expect = 2e-38
Identities = 152/189 (80%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 9244 CTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAG 9303
||||||||| | | ||||| |||| ||| || ||||||| ||||||||||| |||| |
Sbjct 408812 CTTCCAAAAACCGCAACAGGTGCAGGAAGAGGTTGATGACATCCAAGTAGAGGCTGATGG 408871
Query 9304 AGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAA 9363
|||||| ||||| |||||||| || ||| |||| || |||||||| |||||||| || |
Sbjct 408872 CGGCTAATACATACTCTTCAGGTGACAGCCTATGCATCAGTGAGTGTGTGTCATAAATGA 408931
Query 9364 TGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCCACTGTTTCACTTT 9423
||||||| || || | |||||| || | ||||| || ||||||||||||||||| ||| |
Sbjct 408932 TGAATCCACAAAAGAGAAGGGCTCCCACAGCAGCCAAGACCAGCTCCACTGTTTGACTAT 408991
Query 9424 GCACAAATA 9432
| |||||
Sbjct 408992 AGAAAAATA 409000
Score = 129 bits (142), Expect = 8e-25
Identities = 100/119 (84%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| ||||||||||||| || |||||||||||| |||||| | |||||
Sbjct 415661 CCTGCTCCAAATTTGGTGAAATCTCTCTTAGACTGTAGAGTATATCCAGTCAAACCAAGA 415720
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| || ||||||||||| || || ||||||| || | || |||||||||||||||||
Sbjct 415721 AATACAGCAGTAGTCAGTATAAATGCTTGCAGAATAATATATACATCATAGAAAGTAAC 415779
Score = 109 bits (120), Expect = 7e-19
Identities = 91/108 (84%), Gaps = 4/108 (4%)
Strand=Plus/Plus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
||||||| |||||||||||||| || ||||| |||||||||||||||| ||||||||||
Sbjct 435191 CCATTCGGATGTGCACACTGGCGGAGGCCACGCAGCTGCCATAGTTGAAATCGTCCTCGA 435250
Query 9907 TGGAGGAGCACGCGTA--GAGGCTCGGCAT-GGCCATGGCGGC-GCAG 9950
|||||||||| | ||| | || |||| | ||||||| |||| ||||
Sbjct 435251 TGGAGGAGCAGGGGTAGCGGGGGTCGGGGTCGGCCATGTCGGCAGCAG 435298
Score = 84.2 bits (92), Expect = 3e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 9744 TGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTTGTTAAA 9803
|||| || | |||| || | |||||||||||||| | | || ||| | || |||||
Sbjct 421463 TGTACAAATGTCCGTATAGACTCAAAGTATAAAAAAAAAGAAGCTGTCACTGTAGTTAAG 421522
Query 9804 AGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847
|||| ||| ||| ||||||| | |||||||||||||||||| ||
Sbjct 421523 AGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAAGGC 421566
>seq497
Length=1337528
Score = 132 bits (146), Expect = 6e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| |||||||||||||| || ||||| |||||||| || |
Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| || ||||| || ||||||||||| |||||||| || || |||||||
Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708
Query 36300 CAATAAGTCTCTCTCC 36315
| | || || |||||
Sbjct 317707 CCACAACCCTTTCTCC 317692
>seq3057
Length=47849
Score = 125 bits (138), Expect = 9e-24
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| |
Sbjct 11468 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATG 11409
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 11408 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 11349
Query 65301 CTATTTCTAAGACCGTA 65317
|| ||||| | ||| ||
Sbjct 11348 CTGTTTCTTATACCATA 11332
Score = 96.9 bits (106), Expect = 5e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| |||||||| ||||||||||| || | || | || |||| |
Sbjct 2652 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACG 2593
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 2592 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 2533
Query 66176 CGGTTCCAAGTATATGGC 66193
|| |||| ||| || ||
Sbjct 2532 AGGCTCCAGGTAAATAGC 2515
>seq590
Length=1172511
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| ||||| || || | ||| ||||||||||||||||| ||||| || || | || ||
Sbjct 827236 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 827177
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300
||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| ||
Sbjct 827176 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 827118
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601
|||||||||||||| ||||| ||||||||||||||||| || |||| || ||||||
Sbjct 812806 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 812747
Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 36650
||||| || | || | | || || ||||| | | || ||| || ||||
Sbjct 812746 TATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 812698
>seq3107
Length=44217
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| |||||||||||||| | || || || || || || || || | |
Sbjct 40437 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGA 40378
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
||||||| || || || | || || | || || ||| | || || |||| ||| || |
Sbjct 40377 TGGCATAGTCAGGGTGCTCAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTA 40318
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 40317 GTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 40272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657502557956280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |