Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq38 167 3e-36
seq497 150 3e-31
seq3057 116 5e-21
seq590 102 1e-16
>seq38
Length=3903652
Score = 167 bits (184), Expect = 3e-36
Identities = 390/585 (67%), Gaps = 34/585 (6%)
Strand=Plus/Minus
Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004
||||| ||||||| | || || || ||||| | ||| || ||||| ||||| | | |
Sbjct 2423993 TGTTTGAACATCAGGCGGGCAAAGTCACAGTGTAAACCTTCATCTCTGCTAATAAATACC 2423934
Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064
|||||||| ||||| || |||||| | || ||||| |||| |||||| |
Sbjct 2423933 TTGGAAAATGTGAGGCCAGGCATT----------TCTTGAGCCAGAATAACGACGCAGAA 2423884
Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124
| |||||| ||| || |||| || || |||||||| |||| | || ||||| |
Sbjct 2423883 AAACCAGAAGAGA---TTTCTTCCACAGCAGCAAAGGCCACAACCCGTTCCCCATAGGTA 2423827
Query 50125 G---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 50181
| | |||| ||||| | |||||||| |||| ||| || |||||||||||
Sbjct 2423826 GTCTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTCCTTCTTCCCACAAGGCATC 2423767
Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241
|| || |||||||| |||||| | | |||| || ||||||| | | || |
Sbjct 2423766 GTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTA----ATTTGTCAGTG 2423711
Query 50242 AAAAGACTATACAT--------TTCCGA-ATGAATGTTTTCAATGGCCATCTGAAATCCG 50292
| ||||| |||| ||| || || ||| |||| |||| || || || ||
Sbjct 2423710 AGGAGACTGCACATCTCATCCATTCTGAGATATATGATTTCCGTGGCAATTTGGAAGCCA 2423651
Query 50293 TAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCA 50352
|||||||| | || || || ||||| ||| || | ||| || || | || ||||||
Sbjct 2423650 TAGAAACAGCGGGCTTCTGTCATCTGAACTACTTGGCTAAACCGCTCCACCAAGTTTTCA 2423591
Query 50353 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCG 50412
|| ||| | || ||||| |||||||| || |||| ||||| ||||||| | |
Sbjct 2423590 TTTACTCTGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGCATATAAAA---TAGCCC 2423534
Query 50413 TTGGGTGTTAGTTTATTCCAATCATTG-ATATCTTTAGATATATCTACTTCTTCCACTGT 50471
| || | || ||||| | | | || || || || | ||| || |||| ||||
Sbjct 2423533 TCAGGCTTCAG-GGATTCCCAGCGCCGAATGTCCTTGGAAAGATCCACCTCTTTAGCTGT 2423475
Query 50472 CCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
|| ||| || ||||| || || |||| ||| | ||| | |||||
Sbjct 2423474 CCGAAAGGAGGCCTCAGCTTTCTTATCCATCTGCCAAAGATCATG 2423430
>seq497
Length=1337528
Score = 150 bits (166), Expect = 3e-31
Identities = 115/136 (85%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| |||||||||||||| || ||||| |||||||| || |
Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| || ||||| || |||||||||||||||||||| || ||||||||||
Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708
Query 50102 CAACAAGTCTCTCTCC 50117
| |||| || |||||
Sbjct 317707 CCACAACCCTTTCTCC 317692
>seq3057
Length=47849
Score = 116 bits (128), Expect = 5e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| |
Sbjct 11468 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATG 11409
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| ||||||||||||| ||| ||||||||||| || || ||||| || || | | ||||
Sbjct 11408 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 11349
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 11348 CTGTTTCTTATACCATA 11332
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| ||||||||||| || | || || || |||| | ||
Sbjct 2648 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACGCTGT 2589
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| ||
Sbjct 2588 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 2529
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 2528 TCCAGGTAAATAGC 2515
>seq590
Length=1172511
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| ||||| || || ||||| ||||||||||||||||| ||||| || || | || ||
Sbjct 827236 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 827177
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||| ||||| | ||||| || || || ||||| || |||||||| || ||||| ||
Sbjct 827176 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 827117
Query 50104 ACAAGTCTCTCTCC 50117
|| | ||| || ||
Sbjct 827116 ACCACTCTTTCCCC 827103
Score = 87.8 bits (96), Expect = 3e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
||| ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || ||| |
Sbjct 809076 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 809017
Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542
||||||||||| || || |||||||
Sbjct 809016 GTATTGGATTGGAAAGATGACAAATC 808991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717537359945880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |