Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq38 167 3e-36 seq497 150 3e-31 seq3057 116 5e-21 seq590 102 1e-16 >seq38 Length=3903652 Score = 167 bits (184), Expect = 3e-36 Identities = 390/585 (67%), Gaps = 34/585 (6%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 ||||| ||||||| | || || || ||||| | ||| || ||||| ||||| | | | Sbjct 2423993 TGTTTGAACATCAGGCGGGCAAAGTCACAGTGTAAACCTTCATCTCTGCTAATAAATACC 2423934 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 |||||||| ||||| || |||||| | || ||||| |||| |||||| | Sbjct 2423933 TTGGAAAATGTGAGGCCAGGCATT----------TCTTGAGCCAGAATAACGACGCAGAA 2423884 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 | |||||| ||| || |||| || || |||||||| |||| | || ||||| | Sbjct 2423883 AAACCAGAAGAGA---TTTCTTCCACAGCAGCAAAGGCCACAACCCGTTCCCCATAGGTA 2423827 Query 50125 G---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 50181 | | |||| ||||| | |||||||| |||| ||| || ||||||||||| Sbjct 2423826 GTCTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTCCTTCTTCCCACAAGGCATC 2423767 Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241 || || |||||||| |||||| | | |||| || ||||||| | | || | Sbjct 2423766 GTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTA----ATTTGTCAGTG 2423711 Query 50242 AAAAGACTATACAT--------TTCCGA-ATGAATGTTTTCAATGGCCATCTGAAATCCG 50292 | ||||| |||| ||| || || ||| |||| |||| || || || || Sbjct 2423710 AGGAGACTGCACATCTCATCCATTCTGAGATATATGATTTCCGTGGCAATTTGGAAGCCA 2423651 Query 50293 TAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCA 50352 |||||||| | || || || ||||| ||| || | ||| || || | || |||||| Sbjct 2423650 TAGAAACAGCGGGCTTCTGTCATCTGAACTACTTGGCTAAACCGCTCCACCAAGTTTTCA 2423591 Query 50353 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCG 50412 || ||| | || ||||| |||||||| || |||| ||||| ||||||| | | Sbjct 2423590 TTTACTCTGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGCATATAAAA---TAGCCC 2423534 Query 50413 TTGGGTGTTAGTTTATTCCAATCATTG-ATATCTTTAGATATATCTACTTCTTCCACTGT 50471 | || | || ||||| | | | || || || || | ||| || |||| |||| Sbjct 2423533 TCAGGCTTCAG-GGATTCCCAGCGCCGAATGTCCTTGGAAAGATCCACCTCTTTAGCTGT 2423475 Query 50472 CCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 || ||| || ||||| || || |||| ||| | ||| | ||||| Sbjct 2423474 CCGAAAGGAGGCCTCAGCTTTCTTATCCATCTGCCAAAGATCATG 2423430 >seq497 Length=1337528 Score = 150 bits (166), Expect = 3e-31 Identities = 115/136 (85%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||||||||| || ||||| |||||||| || | Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||||||||| || |||||||||| Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| || ||||| Sbjct 317707 CCACAACCCTTTCTCC 317692 >seq3057 Length=47849 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| | Sbjct 11468 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATG 11409 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 11408 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 11349 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 11348 CTGTTTCTTATACCATA 11332 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 2648 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACGCTGT 2589 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| || Sbjct 2588 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 2529 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 2528 TCCAGGTAAATAGC 2515 >seq590 Length=1172511 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| ||||||||||||||||| ||||| || || | || || Sbjct 827236 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 827177 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| || |||||||| || ||||| || Sbjct 827176 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 827117 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 827116 ACCACTCTTTCCCC 827103 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || ||| | Sbjct 809076 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 809017 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 ||||||||||| || || ||||||| Sbjct 809016 GTATTGGATTGGAAAGATGACAAATC 808991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717537359945880