Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq38 178 2e-39 seq497 141 1e-28 seq3057 123 3e-23 seq590 107 3e-18 >seq38 Length=3903652 Score = 178 bits (196), Expect = 2e-39 Identities = 395/588 (67%), Gaps = 40/588 (7%) Strand=Plus/Minus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 ||||| ||||||| | || || || ||||| | ||| |||||||| ||||| ||| | Sbjct 2423993 TGTTTGAACATCAGGCGGGCAAAGTCACAGTGTAAACCTTCATCTCTGCTAATAAATACC 2423934 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 |||||||| ||||| || |||||| | || ||||| |||| |||||| | Sbjct 2423933 TTGGAAAATGTGAGGCCAGGCATT----------TCTTGAGCCAGAATAACGACGCAGAA 2423884 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229 | |||||| ||| || |||| || || |||||||| | || | || ||||| | Sbjct 2423883 AAACCAGAAGAGA---TTTCTTCCACAGCAGCAAAGGCCACAACCCGTTCCCCATA---G 2423830 Query 42230 GCACTGTCAT-GT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 42283 | | | || | || ||||| | |||||||| |||| ||| || |||||||| Sbjct 2423829 GTAGTCTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTCCTTCTTCCCACAAGGC 2423770 Query 42284 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCG 42343 ||||| || |||||||| |||||| | | |||| || ||||||| || | || Sbjct 2423769 ATCGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTA----ATTTGTCA 2423714 Query 42344 ATCAAAAGACTATACAT--------TTCTGA-ATGAATGTTTTCAATGGCCATCTGAAAT 42394 | | ||||| |||| |||||| || ||| |||| |||| || || || Sbjct 2423713 GTGAGGAGACTGCACATCTCATCCATTCTGAGATATATGATTTCCGTGGCAATTTGGAAG 2423654 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 || |||||||| | ||| || || | ||| ||| || | ||| || || | || ||| Sbjct 2423653 CCATAGAAACAGCGGGCTTCTGTCATCTGAACTACTTGGCTAAACCGCTCCACCAAGTTT 2423594 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 || || ||| | || ||||| |||||||| || |||| ||||| ||||||||| Sbjct 2423593 TCATTTACTCTGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGCATATAAAATA---G 2423537 Query 42515 TCGTCCGGTGTTAATTTATTCCAATCATTG-ATATCTTTAGATATATCTACTTCTTCTAC 42573 | || || || | ||||| | | | || || || || | ||| || |||| | Sbjct 2423536 CCCTCAGG-CTTCAGGGATTCCCAGCGCCGAATGTCCTTGGAAAGATCCACCTCTTTAGC 2423478 Query 42574 CGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 |||| ||| || || || || || |||| ||| | ||| | |||||| Sbjct 2423477 TGTCCGAAAGGAGGCCTCAGCTTTCTTATCCATCTGCCAAAGATCATG 2423430 >seq497 Length=1337528 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||||||||| || ||||| |||||||| || | Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| || || ||||||| Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||||| Sbjct 317707 CCACAACCCTTTCTCC 317692 >seq3057 Length=47849 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| | Sbjct 11468 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATG 11409 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 11408 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 11349 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 11348 CTGTTTCTTATACCAT 11333 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 2648 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACGCTGT 2589 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| || Sbjct 2588 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 2529 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 2528 TCCAGGTAAATAGC 2515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | ||| || ||||| || || || || ||||||| Sbjct 7335 CATAGGTTTCATATGGGCCATGCTCCCTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 7276 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || |||| |||||| || || ||||| || || ||||| |||| Sbjct 7275 AATAAATAGTTTCAAATATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 7216 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | ||||| || || ||||| | ||||| || || || || || || | || | Sbjct 7215 ACCTCATCAGAATGAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 7156 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 7155 GTTTATTTGA 7146 >seq590 Length=1172511 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| ||||||||||||||||| ||||| || || | || || Sbjct 827236 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 827177 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 827176 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 827118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670455753784920