Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq38 178 2e-39
seq497 141 1e-28
seq3057 123 3e-23
seq590 107 3e-18
>seq38
Length=3903652
Score = 178 bits (196), Expect = 2e-39
Identities = 395/588 (67%), Gaps = 40/588 (7%)
Strand=Plus/Minus
Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109
||||| ||||||| | || || || ||||| | ||| |||||||| ||||| ||| |
Sbjct 2423993 TGTTTGAACATCAGGCGGGCAAAGTCACAGTGTAAACCTTCATCTCTGCTAATAAATACC 2423934
Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169
|||||||| ||||| || |||||| | || ||||| |||| |||||| |
Sbjct 2423933 TTGGAAAATGTGAGGCCAGGCATT----------TCTTGAGCCAGAATAACGACGCAGAA 2423884
Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229
| |||||| ||| || |||| || || |||||||| | || | || ||||| |
Sbjct 2423883 AAACCAGAAGAGA---TTTCTTCCACAGCAGCAAAGGCCACAACCCGTTCCCCATA---G 2423830
Query 42230 GCACTGTCAT-GT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 42283
| | | || | || ||||| | |||||||| |||| ||| || ||||||||
Sbjct 2423829 GTAGTCTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTCCTTCTTCCCACAAGGC 2423770
Query 42284 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCG 42343
||||| || |||||||| |||||| | | |||| || ||||||| || | ||
Sbjct 2423769 ATCGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTA----ATTTGTCA 2423714
Query 42344 ATCAAAAGACTATACAT--------TTCTGA-ATGAATGTTTTCAATGGCCATCTGAAAT 42394
| | ||||| |||| |||||| || ||| |||| |||| || || ||
Sbjct 2423713 GTGAGGAGACTGCACATCTCATCCATTCTGAGATATATGATTTCCGTGGCAATTTGGAAG 2423654
Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454
|| |||||||| | ||| || || | ||| ||| || | ||| || || | || |||
Sbjct 2423653 CCATAGAAACAGCGGGCTTCTGTCATCTGAACTACTTGGCTAAACCGCTCCACCAAGTTT 2423594
Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514
|| || ||| | || ||||| |||||||| || |||| ||||| |||||||||
Sbjct 2423593 TCATTTACTCTGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGCATATAAAATA---G 2423537
Query 42515 TCGTCCGGTGTTAATTTATTCCAATCATTG-ATATCTTTAGATATATCTACTTCTTCTAC 42573
| || || || | ||||| | | | || || || || | ||| || |||| |
Sbjct 2423536 CCCTCAGG-CTTCAGGGATTCCCAGCGCCGAATGTCCTTGGAAAGATCCACCTCTTTAGC 2423478
Query 42574 CGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621
|||| ||| || || || || || |||| ||| | ||| | ||||||
Sbjct 2423477 TGTCCGAAAGGAGGCCTCAGCTTTCTTATCCATCTGCCAAAGATCATG 2423430
>seq497
Length=1337528
Score = 141 bits (156), Expect = 1e-28
Identities = 113/136 (83%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| |||||||||||||| || ||||| |||||||| || |
Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| || ||||| || |||||||||||||||||||| || || |||||||
Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708
Query 42207 CAATAAGTCTCTCTCC 42222
| | || || |||||
Sbjct 317707 CCACAACCCTTTCTCC 317692
>seq3057
Length=47849
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| |
Sbjct 11468 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATG 11409
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | || |
Sbjct 11408 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 11349
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 11348 CTGTTTCTTATACCAT 11333
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||||||||| |||||||| ||||||||||| || | || || || |||| | ||
Sbjct 2648 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACGCTGT 2589
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| ||
Sbjct 2588 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 2529
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 2528 TCCAGGTAAATAGC 2515
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
|||| || || ||||| || | | ||| || ||||| || || || || |||||||
Sbjct 7335 CATAGGTTTCATATGGGCCATGCTCCCTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 7276
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
||||||| ||||| || |||| |||||| || || ||||| || || ||||| ||||
Sbjct 7275 AATAAATAGTTTCAAATATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 7216
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560
| | | ||||| || || ||||| | ||||| || || || || || || | || |
Sbjct 7215 ACCTCATCAGAATGAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 7156
Query 71561 TCTTATTAGA 71570
||||| ||
Sbjct 7155 GTTTATTTGA 7146
>seq590
Length=1172511
Score = 107 bits (118), Expect = 3e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
|||||||| || || | ||| ||||||||||||||||| ||||| || || | || ||
Sbjct 827236 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 827177
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207
||||| ||||||| ||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct 827176 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 827118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670455753784920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |