Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq456 152 1e-31
seq861 132 1e-25
seq590 120 7e-22
seq375 113 1e-19
seq1347 102 2e-16
seq497 98.7 2e-15
seq182 95.1 3e-14
seq219 87.8 4e-12
>seq456
Length=1409724
Score = 152 bits (168), Expect = 1e-31
Identities = 174/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || || || | || || |||||||| || || || |||
Sbjct 1113412 ATGCCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 1113353
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| || || || || ||||| || |||||||| || |||||
Sbjct 1113352 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 1113293
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || |||||||| || ||||| || || ||||| || | ||| || || || ||
Sbjct 1113292 GGGATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCC 1113233
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| || || || ||||| ||||| || || || || || ||||||||||||
Sbjct 1113232 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 1113179
>seq861
Length=883633
Score = 132 bits (146), Expect = 1e-25
Identities = 150/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||| ||||||| || || |||||||| ||| | || ||||| || || || ||
Sbjct 499607 GTTGATACTTTCTGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTGCCT 499548
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| || |||| || || |||||||||||||| |||| || ||
Sbjct 499547 GCAAAGATGAGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTC 499488
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| | | ||||||||| ||||| | ||| || || || ||||| || || || ||
Sbjct 499487 ACATTCTTCATGGTATCGCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 499428
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || || | ||| ||||||
Sbjct 499427 TTCACGAAGACCTGTATTTTG 499407
>seq590
Length=1172511
Score = 120 bits (132), Expect = 7e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|| ||||| | || |||||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct 827103 GGGGAAAGAGTGGTGGCTTTTGCTGCTGTAGAAGGGATTTTCTTCTCGGGATCTTTTGCT 827162
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
||||| || ||| | ||||||||||| |||||||| ||| | || || || || ||| |
Sbjct 827163 GCTATATTCTGGCTAAAGAAAAGAGGTCTTATGCCTGGACTCACGTTTTCCAATGAACTC 827222
Query 269246 ATAAGCAGGGACGAAG 269261
|| ||||| || ||||
Sbjct 827223 ATCAGCAGAGATGAAG 827238
>seq375
Length=1568959
Score = 113 bits (124), Expect = 1e-19
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
||||||| ||| | || ||||| ||| | | || ||||| || || || || |||| |
Sbjct 1493349 CTTTCTGGATAATGTAATCAGAAAGACTGATGCCATCTTCCAGCTGCTTGCCTACAAAGA 1493290
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489
| |||||||| || ||||| || || ||||||||||| || ||||| || || |||||
Sbjct 1493289 TGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCTTGGATCTTAGCCTTCACATTCC 1493230
Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549
| ||| | || ||||| ||||| || | |||||||| | | || || || ||||
Sbjct 1493229 TGATGGTGTTACTGGGTTCCACCTCCAGAGAGATAGTCTTGCTGATCAGGGTCTTCACAA 1493170
Query 104550 ATATCTGCAT 104559
| ||||||||
Sbjct 1493169 AGATCTGCAT 1493160
>seq1347
Length=544027
Score = 102 bits (112), Expect = 2e-16
Identities = 144/200 (72%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425
|| ||||||| || | |||||||| ||||| || |||||||| | | || |||
Sbjct 219222 GACTCTTTCTAGATGCTGTAGTCAGAAAGAGTGGGGCCATCTTCTAGCTCGCTGCCTGCA 219281
Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT--TTGCTTTTA 104483
|| || |||||||| || ||||| | || ||||||||||||| |||| | ||||| |
Sbjct 219282 AAGATGAGCCTCTGCTGGTCAGGGGAGATGACTTCTTTATCCTGGATCTTATAGCTTTCA 219341
Query 104484 CATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543
||||||| | || || || | | ||||| || ||||| |||| ||||| | || |
Sbjct 219342 CATTTTCAATAGTGTCACTGTGCCCCACCTCCAGAGTAATGATCTTGCCAGTCAAGGTCT 219401
Query 104544 TTACAAATATCTGCATTTTG 104563
| | || || |||||||||
Sbjct 219402 TCA-GAAGATTTGCATTTTG 219420
>seq497
Length=1337528
Score = 98.7 bits (108), Expect = 2e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
||||||||| | || || ||||||||||| ||||| || |||||||| || ||||||||
Sbjct 317692 GGAGAAAGGGTTGTGGCCTTTGCCGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 317751
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| || || ||| | |||||| | ||||| ||||| || | || || || || ||| |
Sbjct 317752 TCAATATTCTGGCTCAAGAAACGTGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTT 317811
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 317812 ATTAGCAGAGATGA 317825
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551
|| |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| |||||
Sbjct 318907 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 318966
Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611
|||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| |
Sbjct 318967 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCT 319026
Query 269612 TTCACTACAGATGCAGAATTCTAA 269635
|| || ||||| || ||||||
Sbjct 319027 TTTACCTTGGATGCTGACTTCTAA 319050
>seq182
Length=2248111
Score = 95.1 bits (104), Expect = 3e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
|||||| | | || || || || || ||||| | ||||| || || || |||| |||
Sbjct 678737 TAGTCACACAAAGCTCGTCCATCGTCCAGTTGCTCGCCAGCGAAGATCAGTGTCTGCTGA 678678
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|||||||| |||||||| |||||||| |||| || ||||| ||||||| |||||
Sbjct 678677 TCAGGAGGAATTCCTTCCTTATCCTGGATCTCGGCCTTTACGCTTTCTACAGTATCTGAG 678618
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
| ||| || || | || || ||||| || | || | | |||| |||||||| |||
Sbjct 678617 GATTCAACTTCGACAGTGATGGTCTTCCCCATCAGCACTGTCACAAGAATCTGCATCTTG 678558
>seq219
Length=2096153
Score = 87.8 bits (96), Expect = 4e-12
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA-GTTCTACCGTCTTCTAG 104412
||||| | || || || || ||||| || | |||||||| | || | | ||||||| |
Sbjct 573072 AGATGAAGAGTGGACTCCTTTTGAATGTTGT-GTCAGATAAAAGTACGTCTGTCTTCTCG 573014
Query 104413 TTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472
||| | ||| | || || || |||||||||||||| || |||||||| || | ||| ||
Sbjct 573013 TTGCTCGCCAACGAAGATCAGTCTCTGTTGATCAGGGGGAATTCCTTCCTTGTTCTGGAT 572954
Query 104473 CTTTGCTTTTACATTTTCTACGGTATC 104499
||| || ||| || ||||| |||||
Sbjct 572953 CTTGGCCTTTGCAATTTCTGTTGTATC 572927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150196575027636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |