Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq456 152 1e-31 seq861 132 1e-25 seq590 120 7e-22 seq375 113 1e-19 seq1347 102 2e-16 seq497 98.7 2e-15 seq182 95.1 3e-14 seq219 87.8 4e-12 >seq456 Length=1409724 Score = 152 bits (168), Expect = 1e-31 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || |||||||| || || || ||| Sbjct 1113412 ATGCCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 1113353 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || ||||| || |||||||| || ||||| Sbjct 1113352 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 1113293 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || |||||||| || ||||| || || ||||| || | ||| || || || || Sbjct 1113292 GGGATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCC 1113233 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| ||||| || || || || || |||||||||||| Sbjct 1113232 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 1113179 >seq861 Length=883633 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||| ||||||| || || |||||||| ||| | || ||||| || || || || Sbjct 499607 GTTGATACTTTCTGGATGTTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTGCTTGCCT 499548 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||| || || |||||||||||||| |||| || || Sbjct 499547 GCAAAGATGAGCCTCTGCTGGCCAGGGGGGATGCCTTCTTTATCCTGGGTCTTGGCCTTC 499488 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| | | ||||||||| ||||| | ||| || || || ||||| || || || || Sbjct 499487 ACATTCTTCATGGTATCGCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 499428 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || | ||| |||||| Sbjct 499427 TTCACGAAGACCTGTATTTTG 499407 >seq590 Length=1172511 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||||| | || |||||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 827103 GGGGAAAGAGTGGTGGCTTTTGCTGCTGTAGAAGGGATTTTCTTCTCGGGATCTTTTGCT 827162 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| |||||||| ||| | || || || || ||| | Sbjct 827163 GCTATATTCTGGCTAAAGAAAAGAGGTCTTATGCCTGGACTCACGTTTTCCAATGAACTC 827222 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 827223 ATCAGCAGAGATGAAG 827238 >seq375 Length=1568959 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| ||| | || ||||| ||| | | || ||||| || || || || |||| | Sbjct 1493349 CTTTCTGGATAATGTAATCAGAAAGACTGATGCCATCTTCCAGCTGCTTGCCTACAAAGA 1493290 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | |||||||| || ||||| || || ||||||||||| || ||||| || || ||||| Sbjct 1493289 TGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCTTGGATCTTAGCCTTCACATTCC 1493230 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | ||| | || ||||| ||||| || | |||||||| | | || || || |||| Sbjct 1493229 TGATGGTGTTACTGGGTTCCACCTCCAGAGAGATAGTCTTGCTGATCAGGGTCTTCACAA 1493170 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 1493169 AGATCTGCAT 1493160 >seq1347 Length=544027 Score = 102 bits (112), Expect = 2e-16 Identities = 144/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || ||||||| || | |||||||| ||||| || |||||||| | | || ||| Sbjct 219222 GACTCTTTCTAGATGCTGTAGTCAGAAAGAGTGGGGCCATCTTCTAGCTCGCTGCCTGCA 219281 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT--TTGCTTTTA 104483 || || |||||||| || ||||| | || ||||||||||||| |||| | ||||| | Sbjct 219282 AAGATGAGCCTCTGCTGGTCAGGGGAGATGACTTCTTTATCCTGGATCTTATAGCTTTCA 219341 Query 104484 CATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543 ||||||| | || || || | | ||||| || ||||| |||| ||||| | || | Sbjct 219342 CATTTTCAATAGTGTCACTGTGCCCCACCTCCAGAGTAATGATCTTGCCAGTCAAGGTCT 219401 Query 104544 TTACAAATATCTGCATTTTG 104563 | | || || ||||||||| Sbjct 219402 TCA-GAAGATTTGCATTTTG 219420 >seq497 Length=1337528 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||||||| | || || ||||||||||| ||||| || |||||||| || |||||||| Sbjct 317692 GGAGAAAGGGTTGTGGCCTTTGCCGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 317751 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || || ||| | |||||| | ||||| ||||| || | || || || || ||| | Sbjct 317752 TCAATATTCTGGCTCAAGAAACGTGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTT 317811 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 317812 ATTAGCAGAGATGA 317825 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 318907 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 318966 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 318967 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCT 319026 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 319027 TTTACCTTGGATGCTGACTTCTAA 319050 >seq182 Length=2248111 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 |||||| | | || || || || || ||||| | ||||| || || || |||| ||| Sbjct 678737 TAGTCACACAAAGCTCGTCCATCGTCCAGTTGCTCGCCAGCGAAGATCAGTGTCTGCTGA 678678 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 |||||||| |||||||| |||||||| |||| || ||||| ||||||| ||||| Sbjct 678677 TCAGGAGGAATTCCTTCCTTATCCTGGATCTCGGCCTTTACGCTTTCTACAGTATCTGAG 678618 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | ||| || || | || || ||||| || | || | | |||| |||||||| ||| Sbjct 678617 GATTCAACTTCGACAGTGATGGTCTTCCCCATCAGCACTGTCACAAGAATCTGCATCTTG 678558 >seq219 Length=2096153 Score = 87.8 bits (96), Expect = 4e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA-GTTCTACCGTCTTCTAG 104412 ||||| | || || || || ||||| || | |||||||| | || | | ||||||| | Sbjct 573072 AGATGAAGAGTGGACTCCTTTTGAATGTTGT-GTCAGATAAAAGTACGTCTGTCTTCTCG 573014 Query 104413 TTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472 ||| | ||| | || || || |||||||||||||| || |||||||| || | ||| || Sbjct 573013 TTGCTCGCCAACGAAGATCAGTCTCTGTTGATCAGGGGGAATTCCTTCCTTGTTCTGGAT 572954 Query 104473 CTTTGCTTTTACATTTTCTACGGTATC 104499 ||| || ||| || ||||| ||||| Sbjct 572953 CTTGGCCTTTGCAATTTCTGTTGTATC 572927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150196575027636