Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq328 143 2e-29 >seq328 Length=1672696 Score = 143 bits (158), Expect = 2e-29 Identities = 123/152 (81%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| |||||||||||||| ||||||||| Sbjct 136832 GGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGATG 136891 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||| || || |||| || |||||||| |||||||| ||||| ||||| |||||| Sbjct 136892 CCCCAGGCTGAGAACCACGACCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAAAAG 136951 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || ||||| || | ||||| ||||| Sbjct 136952 CTGAAGACTCTGCGGCTGAGGCTGCGCCGCTG 136983 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 129092 GCTGCAGGAACGAGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACAT 129151 ||| || || |||| || ||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 139144 GCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACAT 139203 Query 129152 AGAATCATACATGAC 129166 |||| | |||||||| Sbjct 139204 AGAAACCTACATGAC 139218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447294438977040