Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq328 129 6e-25 >seq328 Length=1672696 Score = 129 bits (142), Expect = 6e-25 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||||||| ||||||| || | Sbjct 136830 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 136889 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || || ||||| || ||| |||||||||||||| ||||| || | Sbjct 136890 TGCCCCAGGCTGAGAACCACGACCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAAA 136949 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || ||||| || |||| Sbjct 136950 AGCTGAAGACTCTGCGGCT 136968 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || | ||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 139143 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 139202 Query 10419 TAGAAGCATACATGACCATGA 10439 ||||| | |||||||| |||| Sbjct 139203 TAGAAACCTACATGACAATGA 139223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546821783233920