Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq858 158 2e-33
seq116 122 1e-22
>seq858
Length=884820
Score = 158 bits (174), Expect = 2e-33
Identities = 182/245 (74%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672
||||| | ||||| | ||||||| ||||| | || ||| ||| ||||| || ||
Sbjct 462140 CCGATCAGTATGAGCCTGCTGGTCTGGAACAGCCGCTCATCATCCCACTCTGGGTGCTCC 462199
Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732
|||| || ||||| ||||||||||| ||||||| | ||| || || || ||||||||
Sbjct 462200 TGTTTAAGCACATCACACACTCTGTTATGTTCCCGCAACCAAATCGTGGCATACATCATC 462259
Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792
|||||||||||||| || ||| | || || || || || | || | | |||||| ||
Sbjct 462260 AGACCAGGCACCAGCCCGAAAACTTCCTGGCCCACGGCAAACCGTAGGTGTTCGGGAACA 462319
Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCG 9852
| ||| || |||||||| | |||||| ||||||||| | ||| ||||||| || ||
Sbjct 462320 TGGGGTGGGTAGATCATCTCCACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCA 462379
Query 9853 TCAAT 9857
|||||
Sbjct 462380 TCAAT 462384
Score = 125 bits (138), Expect = 1e-23
Identities = 149/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 463177 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 463236
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
||| || || || || || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 463237 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 463296
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
||| |||| | || | |||||| ||||||||||| | | | ||| || || |
Sbjct 463297 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 463356
Query 10208 ttttttACCTGGTGAACGAGAA 10229
||| || |||| || |||||
Sbjct 463357 TTTCTTGCCTGAAAAATGAGAA 463378
Score = 87.8 bits (96), Expect = 3e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | || |||||||| || | || || || || ||| || |
Sbjct 463786 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 463845
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|| ||||||||||| || || |||||||||||| || | |||||| ||||||| |
Sbjct 463846 TAGTAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACGTTGTAAGTT 463905
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| || || |||||||||| || || |||||
Sbjct 463906 GGTGGACTCTCAATCAAATGTGACCTCGCTGAA 463938
>seq116
Length=2671106
Score = 122 bits (134), Expect = 1e-22
Identities = 148/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
||||||| || || |||| || || ||||| ||||| || |||||||| | || |
Sbjct 65633 TCTTGACCATATTGAAGCCCATCTCACCACCGAATGTGCTTGGCTTCCAGTACTCTGGAG 65692
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||| | | |||||| ||||||||||| |||||||| | || | || |
Sbjct 65693 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 65752
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || ||||||| ||| ||| || ||| |||| | | || | ||| |||||||
Sbjct 65753 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCCAGAAGTAGCCCCGGGTAGAACTCCA 65812
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
|| ||||||||||| || ||
Sbjct 65813 AGGCATCGATGTCTCCATACAG 65834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 707803282626480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |