Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq858 158 2e-33 seq116 122 1e-22 >seq858 Length=884820 Score = 158 bits (174), Expect = 2e-33 Identities = 182/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 ||||| | ||||| | ||||||| ||||| | || ||| ||| ||||| || || Sbjct 462140 CCGATCAGTATGAGCCTGCTGGTCTGGAACAGCCGCTCATCATCCCACTCTGGGTGCTCC 462199 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 |||| || ||||| ||||||||||| ||||||| | ||| || || || |||||||| Sbjct 462200 TGTTTAAGCACATCACACACTCTGTTATGTTCCCGCAACCAAATCGTGGCATACATCATC 462259 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 |||||||||||||| || ||| | || || || || || | || | | |||||| || Sbjct 462260 AGACCAGGCACCAGCCCGAAAACTTCCTGGCCCACGGCAAACCGTAGGTGTTCGGGAACA 462319 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCG 9852 | ||| || |||||||| | |||||| ||||||||| | ||| ||||||| || || Sbjct 462320 TGGGGTGGGTAGATCATCTCCACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCA 462379 Query 9853 TCAAT 9857 ||||| Sbjct 462380 TCAAT 462384 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 463177 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 463236 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || || || || ||| |||| || |||||||| | || |||||||||||||| Sbjct 463237 AAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 463296 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 ||| |||| | || | |||||| ||||||||||| | | | ||| || || | Sbjct 463297 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 463356 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| || |||| || ||||| Sbjct 463357 TTTCTTGCCTGAAAAATGAGAA 463378 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || |||||||| || | || || || || ||| || | Sbjct 463786 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 463845 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||||||||| || || |||||||||||| || | |||||| ||||||| | Sbjct 463846 TAGTAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACGTTGTAAGTT 463905 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || || |||||||||| || || ||||| Sbjct 463906 GGTGGACTCTCAATCAAATGTGACCTCGCTGAA 463938 >seq116 Length=2671106 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || || |||| || || ||||| ||||| || |||||||| | || | Sbjct 65633 TCTTGACCATATTGAAGCCCATCTCACCACCGAATGTGCTTGGCTTCCAGTACTCTGGAG 65692 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | |||||| ||||||||||| |||||||| | || | || | Sbjct 65693 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 65752 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||||| ||| ||| || ||| |||| | | || | ||| ||||||| Sbjct 65753 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCCAGAAGTAGCCCCGGGTAGAACTCCA 65812 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 || ||||||||||| || || Sbjct 65813 AGGCATCGATGTCTCCATACAG 65834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707803282626480