Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2881 161 2e-35
seq1537 127 3e-25
seq1215 127 3e-25
>seq2881
Length=65454
Score = 161 bits (178), Expect = 2e-35
Identities = 200/271 (74%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||| ||||| | | |||| |||||||||||||||| || || ||||| || ||
Sbjct 51742 GCTAAGCGCCATCGTA-AGGTCTTGAGAGATAACATCCAAGGCATTACTAAGCCGGCGAT 51800
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || || ||||| ||||| ||||||||||| ||||||| | ||||||||||||
Sbjct 51801 TCGGCGCCTTGCTCGGCGTGGAGGAGTCAAGCGCATCTCTGGCCTCATCTATGAAGAGAC 51860
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| | ||||| ||| ||| || | || || || ||| |||||
Sbjct 51861 CCGGGGTGTGCTAAAGGTGTTCCTAGAGAACGTCATTCGGGACGCAGTCACCTACACCGA 51920
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||||||||| ||||||| | || ||||| | || || || ||
Sbjct 51921 GCACGCCAAGCGCAAGACTGTCACTGCCATGGACGTGGTGTATGCCCTCAAGCGGCAGGG 51980
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|||| | ||||| || ||| | ||| ||
Sbjct 51981 ACGTACCCTGTATGGCTTCGGAGGCTAAGCT 52011
>seq1537
Length=447023
Score = 127 bits (140), Expect = 3e-25
Identities = 174/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| ||||||| || || || |||||||| || ||||||||||| || ||
Sbjct 359242 CGCCAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 359183
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 359182 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 359123
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 359122 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 359063
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 359062 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 359003
Query 16672 CCG 16674
|||
Sbjct 359002 CCG 359000
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 105247 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 105306
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 105307 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 105366
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 105367 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 105426
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 105427 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 105486
Query 16672 CCG 16674
|||
Sbjct 105487 CCG 105489
Score = 123 bits (136), Expect = 4e-24
Identities = 184/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 111676 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 111617
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 111616 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 111557
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 111556 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 111497
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 111496 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 111437
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || || |||||
Sbjct 111436 CCGCACCCTCTACGGCTTTGG 111416
Score = 123 bits (136), Expect = 4e-24
Identities = 184/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 173340 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 173399
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 173400 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 173459
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 173460 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 173519
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 173520 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 173579
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | ||||| || ||
Sbjct 173580 CCGCACCCTCTATGGCTTCGG 173600
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 252661 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 252602
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 252601 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 252542
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 252541 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 252482
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 252481 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 252422
Query 16672 CCG 16674
|||
Sbjct 252421 CCG 252419
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 283289 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 283230
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 283229 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 283170
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 283169 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 283110
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 283109 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 283050
Query 16672 CCG 16674
|||
Sbjct 283049 CCG 283047
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 306583 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 306642
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 306643 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 306702
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 306703 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 306762
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 306763 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 306822
Query 16672 CCG 16674
|||
Sbjct 306823 CCG 306825
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 325105 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 325164
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 325165 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 325224
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 325225 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 325284
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 325285 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 325344
Query 16672 CCG 16674
|||
Sbjct 325345 CCG 325347
Score = 120 bits (132), Expect = 5e-23
Identities = 183/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 339804 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 339745
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 339744 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 339685
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 339684 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 339625
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || | || ||
Sbjct 339624 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGAGCCAGGG 339565
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | |||| || || ||
Sbjct 339564 CCGCACCCTTTACGGCTTCGG 339544
>seq1215
Length=622372
Score = 127 bits (140), Expect = 3e-25
Identities = 174/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| ||||||| || || || |||||||| || ||||||||||| || ||
Sbjct 592830 CGCCAAGCGCCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 592771
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 592770 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 592711
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 592710 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 592651
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 592650 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 592591
Query 16672 CCG 16674
|||
Sbjct 592590 CCG 592588
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 121056 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 121115
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 121116 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 121175
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 121176 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 121235
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 121236 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 121295
Query 16672 CCG 16674
|||
Sbjct 121296 CCG 121298
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 159741 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 159682
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 159681 CCGGCGGCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 159622
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 159621 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 159562
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 159561 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 159502
Query 16672 CCG 16674
|||
Sbjct 159501 CCG 159499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79000714151631
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