Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq590 95.1 1e-14
seq497 87.8 2e-12
>seq590
Length=1172511
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| ||||| || | ||| ||||||||| ||| || ||| | | | |
Sbjct 851888 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 851829
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
|||||| || ||||| ||| || || |||||||| || ||||| || || || ||
Sbjct 851828 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTT 851769
Query 21246 CCATAAAATCAAATGGATTTTC 21267
||||||||||||| ||||||||
Sbjct 851768 CCATAAAATCAAAGGGATTTTC 851747
>seq497
Length=1337528
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186
||| || |||||||| || | ||| ||| ||| | ||||||| | |||||| |
Sbjct 319050 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 318991
Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246
||||| || | ||||| || || || || || ||||| ||||||| ||| ||| ||
Sbjct 318990 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 318931
Query 21247 CATAAAATCAAATGGATTTTC 21267
|||||| ||||||||||||||
Sbjct 318930 CATAAAGTCAAATGGATTTTC 318910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531359145469080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |