Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq497 138 1e-27
seq3057 125 9e-24
seq590 107 2e-18
>seq497
Length=1337528
Score = 138 bits (152), Expect = 1e-27
Identities = 112/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| |||||||||||||| || ||||| |||||||| || |
Sbjct 317827 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 317768
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| || || || || |||||||||||||||||||| || || |||||||
Sbjct 317767 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 317708
Query 33446 CAATAAGTCTCTCTCC 33461
| | || || |||||
Sbjct 317707 CCACAACCCTTTCTCC 317692
>seq3057
Length=47849
Score = 125 bits (138), Expect = 9e-24
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| ||||| ||||| || || || || ||||| ||||| |
Sbjct 11468 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTTGTATAAGGTTCAATG 11409
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 11408 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 11349
Query 62457 CTATTTCTAAGACCGTA 62473
|| ||||| | ||| ||
Sbjct 11348 CTGTTTCTTATACCATA 11332
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 2652 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACG 2593
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 2592 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 2533
Query 63332 CGGTTCCAAGTATATGGC 63349
|| |||| ||| || ||
Sbjct 2532 AGGCTCCAGGTAAATAGC 2515
>seq590
Length=1172511
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| || || ||||| ||||||||||||||||| ||||| || || | || ||
Sbjct 827236 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 827177
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446
||||| ||||| | ||| || ||||| || ||||| || |||||||| |||||||| ||
Sbjct 827176 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 827118
Score = 93.3 bits (102), Expect = 5e-14
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745
|||||||||||||||| ||||| ||||||||||||||||| || |||| || ||||
Sbjct 812808 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAA 812749
Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796
||||||| || |||| | | || || ||||| | | || ||| || ||||
Sbjct 812748 AATATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 812698
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860
||| ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || |||
Sbjct 809076 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 809017
Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886
||||||||||| || || |||||||
Sbjct 809016 GTATTGGATTGGAAAGATGACAAATC 808991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622312829505720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |