Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3057 96.9 9e-15 seq497 84.2 6e-11 >seq3057 Length=47849 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 3998 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 4057 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 4058 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGC 4117 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 4118 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 4150 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| || ||||||||||||||||| | Sbjct 2506 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATTTTTGAGTTTCTTGATTTA 2565 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| ||||| || ||| |||||| | || || |||| ||| |||||| || Sbjct 2566 AAGAAGAACACAGGAAAGGAAGAACAGCGTGCCAGGGACCTTTTCTTTGCGCTTTGGATT 2625 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 2626 CCAGATCTCTTCATGAAACGAGTGGAG 2652 >seq497 Length=1337528 Score = 84.2 bits (92), Expect = 6e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||| | || ||||| || ||||||||||| | ||| |||| || ||||| Sbjct 317707 GCCTTTGCCGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTC 317766 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || ||||||| | ||||| || || |||||||| ||||| | |||||| |||||||| Sbjct 317767 AAGAAACGTGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAG 317826 Query 22621 G 22621 | Sbjct 317827 G 317827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301993164807194