Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq456 100 2e-16
seq17 89.7 4e-13
>seq456
Length=1409724
Score = 100 bits (110), Expect = 2e-16
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| || | ||| |||| ||||| || ||||| || || |||||||| || |
Sbjct 1113409 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113350
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | || |||| || ||||| ||| | || |||| ||| ||||| ||
Sbjct 1113349 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113290
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||||||| || || || || |||||| | | | ||||| | |||||||
Sbjct 1113289 ATGCCCTCTTTATCTTGGATCTTGGC--CTTCACATTCTCGATGGTGTCACTGGGCTCCA 1113232
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||| ||||||||| || || ||||| || || || || ||||||||||||
Sbjct 1113231 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 1113179
>seq17
Length=4663558
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/225 (69%), Gaps = 13/225 (6%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| ||||| ||||| || ||||||||||| | || ||| | ||
Sbjct 4172527 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4172586
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| ||||| |||||| | || | || ||| ||||| || | |||||| |||||
Sbjct 4172587 TTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 4172646
Query 16843 GGCAATTTG--CTG---CTTCACCTGG------CCCACAGTGTCGCCGGGCTCCGTTTCC 16891
| |||| ||| |||| ||| | | | ||||||| |||||| |||
Sbjct 4172647 --CTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCC 4172704
Query 16892 ACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
| ||||||||| || || |||| || || || || |||||||||
Sbjct 4172705 AGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404685796606330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |