Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq456 100 2e-16 seq17 89.7 4e-13 >seq456 Length=1409724 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || ||||| || || |||||||| || | Sbjct 1113409 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 1113350 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 1113349 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1113290 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||| || || || || |||||| | | | ||||| | ||||||| Sbjct 1113289 ATGCCCTCTTTATCTTGGATCTTGGC--CTTCACATTCTCGATGGTGTCACTGGGCTCCA 1113232 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||||||||| || || ||||| || || || || |||||||||||| Sbjct 1113231 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 1113179 >seq17 Length=4663558 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/225 (69%), Gaps = 13/225 (6%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||| ||||| || ||||||||||| | || ||| | || Sbjct 4172527 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4172586 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| ||||| |||||| | || | || ||| ||||| || | |||||| ||||| Sbjct 4172587 TTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 4172646 Query 16843 GGCAATTTG--CTG---CTTCACCTGG------CCCACAGTGTCGCCGGGCTCCGTTTCC 16891 | |||| ||| |||| ||| | | | ||||||| |||||| ||| Sbjct 4172647 --CTGTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCC 4172704 Query 16892 ACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | ||||||||| || || |||| || || || || ||||||||| Sbjct 4172705 AGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCATT 4172749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404685796606330